Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0169
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581...   129   2e-30
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117...   112   3e-25
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872     31   0.67 
01_03_0119 + 12709976-12710057,12710157-12710230,12710312-127108...    30   2.1  
11_06_0527 + 24672649-24672707,24673459-24673817,24674366-246744...    28   8.3  

>10_02_0145 -
           5817684-5817751,5817850-5817955,5818145-5818222,
           5818334-5818380,5818476-5818557,5818688-5818829,
           5819027-5819142,5819244-5819318,5819413-5819531,
           5820569-5820636,5820739-5820803,5820887-5820968,
           5821462-5821514,5821589-5821711,5821986-5822054,
           5822581-5822649,5822735-5822786,5823423-5823475,
           5823562-5823654,5823762-5823806,5824616-5824777
          Length = 588

 Score =  129 bits (311), Expect = 2e-30
 Identities = 56/116 (48%), Positives = 82/116 (70%)
 Frame = +3

Query: 27  SVQEMLQAHWKQFGRNYFTRYDYENCSSESCDEMMSVLERTITSPGFMGSAHSAGGKEYV 206
           SV+++ + HW  +GRN+F+RYDYE C SES ++MM  L R + +    G  +      Y 
Sbjct: 439 SVEDVAREHWATYGRNFFSRYDYEECESESANKMMEHL-RDVIAKSKPGEKYG----NYT 493

Query: 207 VKLADNFSYVDPIDQSVAKRQGLRIIFEDGSRIVFRLSGTGSSGATVRVYVDSYEA 374
           ++ AD+FSY DP+D S   +QGLR +F DGSRI+FRLSGTGS+GAT+R+Y++ +E+
Sbjct: 494 LQFADDFSYTDPVDGSTVSKQGLRFVFTDGSRIIFRLSGTGSAGATIRIYIEQFES 549



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 403 ALGPLVSIALDISRLKQYTGRDEPTVIT 486
           AL PL+ +AL +S+LK +TGRD+PTVIT
Sbjct: 561 ALKPLIDLALSVSKLKDFTGRDKPTVIT 588


>03_05_0898 +
           28610123-28610203,28611190-28611271,28611666-28611721,
           28612253-28612366,28612484-28612546,28612633-28612752,
           28612850-28612950,28613097-28613156,28613243-28613342,
           28613421-28613575,28613661-28613756,28614269-28614403,
           28614510-28614573,28614648-28614729,28615038-28615213,
           28615302-28615378,28615637-28615769,28615939-28616055,
           28616394-28616398,28616564-28616684,28616711-28617751
          Length = 992

 Score =  112 bits (269), Expect = 3e-25
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
 Frame = +3

Query: 27  SVQEMLQAHWKQFGRNYFTRYDYENCSSESCDEMMSVLERTITSPGFMGSAHSAGGKEYV 206
           +V+++++ HW  +GR+Y+TRYDYEN  + +  E+M+ L    +S   +         +  
Sbjct: 472 TVEDIVRQHWGTYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKEIRSDVS 531

Query: 207 -VKLADNFSYVDPIDQSVAKRQGLRIIFEDGSRIVFRLSGTGSSGATVRVYVDSYE 371
            V  AD F Y DP+D SV+K QG+R +F DGSR+VFRLSGTGS GAT+RVY++ YE
Sbjct: 532 DVVAADEFEYKDPVDGSVSKHQGVRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYE 587


>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
          Length = 686

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 444 LEAIHGSGRAHSHHLKLQRENLTRTKTLY-TILNFKESSLCI 566
           LE +HGSG A+  HLK++  N+   + L   I +F  ++LC+
Sbjct: 512 LEFLHGSGNANIMHLKIKPRNILLDQELCPKISDFGVANLCL 553


>01_03_0119 +
           12709976-12710057,12710157-12710230,12710312-12710809,
           12711520-12712095,12712181-12712288,12712349-12712393,
           12712614-12713342
          Length = 703

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 429 PGHIPLEAIHGSGRAHSHHL 488
           PG  P  A+HGS +AH  HL
Sbjct: 621 PGQNPNSAVHGSSKAHEKHL 640


>11_06_0527 +
           24672649-24672707,24673459-24673817,24674366-24674435,
           24674656-24674730,24674731-24674846,24674975-24675006,
           24675117-24675242,24675379-24675537,24675886-24675978,
           24676069-24676236,24676388-24676486,24676603-24676820,
           24676900-24676957,24677421-24677509,24677590-24677721,
           24678000-24678122,24678568-24678666,24678774-24678965,
           24679127-24679298,24679416-24679572,24679704-24679906,
           24680105-24680246,24680324-24680484,24680585-24680701,
           24680788-24680874
          Length = 1101

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 315 DGTLCGIRPRILSAGPVSWPRS 250
           D  + G +P + SAGP SWP S
Sbjct: 485 DDEMNGTQPMLNSAGPESWPHS 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,705
Number of Sequences: 37544
Number of extensions: 248927
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)