Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0169
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7015| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 8e-31
SB_46121| Best HMM Match : Cornifin (HMM E-Value=0.47) 31 0.91
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2) 29 4.9
>SB_7015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 130 bits (315), Expect = 8e-31
Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 4/127 (3%)
Frame = +3
Query: 3 SLLAHSGRSVQEMLQAHWKQFGRNYFTRYDYENCSSESCDEMMSVLERTITSPGFMGSAH 182
S+LA+ SV E+L+ W + GRN+FTRYDYEN +++ + M L + + +G +
Sbjct: 211 SILANRKMSVAEVLKDFWSKNGRNFFTRYDYENVDNQAANRMNDNLRQQASEGALIGKTY 270
Query: 183 SAGG----KEYVVKLADNFSYVDPIDQSVAKRQGLRIIFEDGSRIVFRLSGTGSSGATVR 350
+ G K Y V+ D+FSY DPID S++++QG+ +IF DGSRIV+RLSGTGS GAT+R
Sbjct: 271 TGGEGKYQKSYTVQKMDDFSYTDPIDGSISQKQGVCVIFTDGSRIVYRLSGTGSVGATIR 330
Query: 351 VYVDSYE 371
VY++SYE
Sbjct: 331 VYIESYE 337
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +1
Query: 406 LGPLVSIALDISRLKQYTGRDEPTVIT 486
L PLV IAL IS L+ TGRD PTVIT
Sbjct: 351 LRPLVDIALRISDLQALTGRDAPTVIT 377
>SB_46121| Best HMM Match : Cornifin (HMM E-Value=0.47)
Length = 239
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 32 YCSTILTDYCTTILTDYCTTILT 54
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 80 YCSTILTDYCTTILTDYCTTILT 102
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 120 YCSTILTDYCTTILTDYCTTILT 142
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 40 YCTTILTDYCTTILTDYCSTILT 62
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 88 YCTTILTDYCTTILTDYCSTILT 110
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 128 YCTTILTDYCTTILTDYCTTILT 150
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 136 YCTTILTDYCTTILTDYCTTILT 158
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 144 YCTTILTDYCTTILTDYCTTILT 166
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 152 YCTTILTDYCTTILTDYCTTILT 174
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 192 YCTTILTDYCTTILTDYCTTILT 214
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 200 YCTTILTDYCTTILTDYCTTILT 222
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD+ T L+
Sbjct: 208 YCTTILTDYCTTILTDYCTTILT 230
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY ++ILTD+ T L+
Sbjct: 104 YCSTILTDYCSTILTDYCSTILT 126
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY ++ILTD+ T L+
Sbjct: 24 YCSTILTDYCSTILTDYCTTILT 46
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY ++ILTD+ T L+
Sbjct: 72 YCSTILTDYCSTILTDYCTTILT 94
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY ++ILTD+ T L+
Sbjct: 112 YCSTILTDYCSTILTDYCTTILT 134
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY +ILTD+ T L+
Sbjct: 56 YCSTILTDYCITILTDYCSTILT 78
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY ++ILTD+ T L+
Sbjct: 96 YCTTILTDYCSTILTDYCSTILT 118
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY T+ILTD T L+
Sbjct: 160 YCTTILTDYCTTILTDHCSTILT 182
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKT 690
YC +I+ DY T+ILTD+ T
Sbjct: 216 YCTTILTDYCTTILTDYCTT 235
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY ++ILTD+ T L+
Sbjct: 64 YCITILTDYCSTILTDYCSTILT 86
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ Y T+ILTD+ T L+
Sbjct: 184 YCSTILTGYCTTILTDYCTTILT 206
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 631 YCGSIVKDYHTSILTDFAKTTLS 699
YC +I+ DY ++ILTD+ T L+
Sbjct: 48 YCTTILTDYCSTILTDYCITILT 70
>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +3
Query: 240 PIDQSVAKRQ--GLRIIFEDGSRIVFRL 317
PIDQ + +Q G +IFE+G ++V++L
Sbjct: 757 PIDQEIYMKQPEGFEVIFENGEKLVYKL 784
>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 72 NYFTRYDYENCSSESCDEMMSVLERTITSPGFMGSAHSAG 191
NY + DY CS +S DE L + +PG A AG
Sbjct: 737 NYTCKRDYNECSEQS-DECDHTLATCVNTPGSYACACPAG 775
>SB_40142| Best HMM Match : DUF827 (HMM E-Value=1.2)
Length = 334
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 183 SAGGKEYVVKLADNFSYVDPIDQSVAKRQGLRIIFEDGSRI 305
SA +EY+ +A++ + +PIDQ L+++ + S +
Sbjct: 22 SAKNREYLASMANDMRFSEPIDQGSNLHMALKLLKAENSNL 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,010,714
Number of Sequences: 59808
Number of extensions: 270918
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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