Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0169
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-2|AAA83163.1|  568|Caenorhabditis elegans Hypothetical pr...   150   8e-37

>U41533-2|AAA83163.1|  568|Caenorhabditis elegans Hypothetical
           protein R05F9.6 protein.
          Length = 568

 Score =  150 bits (364), Expect = 8e-37
 Identities = 69/121 (57%), Positives = 90/121 (74%)
 Frame = +3

Query: 6   LLAHSGRSVQEMLQAHWKQFGRNYFTRYDYENCSSESCDEMMSVLERTITSPGFMGSAHS 185
           +LA    SV+E++  HW+++GRN FTRYDYEN  +   + +M+ LE  +  P F+G   S
Sbjct: 407 ILADRKESVEEIVTKHWQKYGRNVFTRYDYENVDAAGANLLMTFLEAQL--PAFVGRDFS 464

Query: 186 AGGKEYVVKLADNFSYVDPIDQSVAKRQGLRIIFEDGSRIVFRLSGTGSSGATVRVYVDS 365
           A G  Y V +ADNF Y DP+D SVA +QGLRI+FEDGSR+VFRLSGTGS+GAT+R+YVDS
Sbjct: 465 ANGVTYKVAVADNFQYTDPVDGSVATKQGLRIVFEDGSRLVFRLSGTGSAGATIRLYVDS 524

Query: 366 Y 368
           Y
Sbjct: 525 Y 525



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 391 PAADALGPLVSIALDISRLKQYTGRDEPTVIT 486
           PA + L PLV IALD  +++Q+T R  PTVIT
Sbjct: 537 PAHELLKPLVLIALDTCKMEQFTNRKAPTVIT 568


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,887
Number of Sequences: 27780
Number of extensions: 201584
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)