Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0169
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 130 1e-30
At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putati... 119 2e-27
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati... 118 4e-27
At3g50770.1 68416.m05560 calmodulin-related protein, putative si... 30 1.7
At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel... 29 3.0
At5g67240.1 68418.m08475 exonuclease family protein contains exo... 29 4.0
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel... 29 4.0
At4g14920.1 68417.m02292 PHD finger transcription factor, putative 27 9.2
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 130 bits (313), Expect = 1e-30
Identities = 58/115 (50%), Positives = 83/115 (72%)
Frame = +3
Query: 27 SVQEMLQAHWKQFGRNYFTRYDYENCSSESCDEMMSVLERTITSPGFMGSAHSAGGKEYV 206
SV ++++ +W +GRN+F+RYDYE C SE ++M+ L R I S G + YV
Sbjct: 474 SVADVVKEYWATYGRNFFSRYDYEECESEGANKMIEYL-REILSKSKAGDVYG----NYV 528
Query: 207 VKLADNFSYVDPIDQSVAKRQGLRIIFEDGSRIVFRLSGTGSSGATVRVYVDSYE 371
++ AD+FSY DP+D SVA +QG+R +F DGSRI+FRLSGTGS+GATVR+Y++ +E
Sbjct: 529 LQFADDFSYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFE 583
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +1
Query: 403 ALGPLVSIALDISRLKQYTGRDEPTVIT 486
AL PL+ +AL +S+LK +TGR++PTVIT
Sbjct: 596 ALKPLIDLALSVSKLKDFTGREKPTVIT 623
>At1g70730.1 68414.m08153 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93804 Phosphoglucomutase, cytoplasmic 1 (EC 5.4.2.2)
(Glucose phosphomutase 1) (PGM 1) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 585
Score = 119 bits (287), Expect = 2e-27
Identities = 54/116 (46%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Frame = +3
Query: 27 SVQEMLQAHWKQFGRNYFTRYDYENCSSESCDEMMSVLERTITSPGFMGSAHSAGGKEYV 206
+V+++++ HW +GR+Y+TRYDYEN + + E+M +L + +S + E
Sbjct: 430 TVEDIVRQHWATYGRHYYTRYDYENVDATAAKELMGLLVKLQSSLPEVNKIIKGIHPEVA 489
Query: 207 -VKLADNFSYVDPIDQSVAKRQGLRIIFEDGSRIVFRLSGTGSSGATVRVYVDSYE 371
V AD F Y DP+D SV+K QG+R +FEDGSR+VFRLSGTGS GAT+R+Y++ YE
Sbjct: 490 NVASADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYE 545
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1
Query: 385 GAPAADALGPLVSIALDISRLKQYTGRDEPTVIT 486
G + DALGPLV +AL +S+++++TGR PTVIT
Sbjct: 552 GRDSQDALGPLVDVALKLSKMQEFTGRSSPTVIT 585
>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
(Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 583
Score = 118 bits (284), Expect = 4e-27
Identities = 54/116 (46%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +3
Query: 27 SVQEMLQAHWKQFGRNYFTRYDYENCSSESCDEMMSVLERTITS-PGFMGSAHSAGGKEY 203
SV+++++ HW +GR+Y+TRYDYEN + E+M L + +S P
Sbjct: 428 SVEDIVRQHWATYGRHYYTRYDYENVDAGKAKELMEHLVKLQSSIPEVNKIVKGIRSDVA 487
Query: 204 VVKLADNFSYVDPIDQSVAKRQGLRIIFEDGSRIVFRLSGTGSSGATVRVYVDSYE 371
V AD F Y DP+D S++K QG+R +FEDGSR+VFRLSGTGS GAT+R+Y++ YE
Sbjct: 488 SVASADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYE 543
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +1
Query: 385 GAPAADALGPLVSIALDISRLKQYTGRDEPTVIT 486
G + +AL PLV +AL +S+++++TGR PTVIT
Sbjct: 550 GRESQEALSPLVDLALKLSKMEEFTGRSAPTVIT 583
>At3g50770.1 68416.m05560 calmodulin-related protein, putative
similar to regulator of gene silencing
calmodulin-related protein GI:12963415 from [Nicotiana
tabacum]
Length = 205
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = -3
Query: 374 RLVRVHVDSDGSAGTARAAETEHYAGSVLEY 282
R V H DSDG G A E HY GSV EY
Sbjct: 66 RQVFSHFDSDGD-GKISAFELRHYFGSVGEY 95
>At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel,
putative (CNGC7) similar to cyclic nucleotide and
calmodulin-regulated ion channel protein GI:4581207 from
[Arabidopsis thaliana]
Length = 709
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -1
Query: 343 VAPELPVPLRRNTMRDPSSNIIRRPCLLATL*S--MGST*EKLSASLTTYSLPPAECAEP 170
+ LP LRR+ R N++RR L A + + + E+L SL T S +P
Sbjct: 447 IVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDP 506
Query: 169 MNPGEVMVRSR 137
+N ++R R
Sbjct: 507 VNEMMFIIRGR 517
>At5g67240.1 68418.m08475 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 745
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 224 LLLRGPHRSERGQETGPADNIRGRIPHSVPSQR-HG 328
+++ R E QE G A +IPH VPS+ HG
Sbjct: 277 MMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEELHG 312
>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
putative (CNGC8) similar to cyclic nucleotide and
calmodulin-regulated ion channel GI:4581207 from
(Arabidopsis thaliana)
Length = 728
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -1
Query: 343 VAPELPVPLRRNTMRDPSSNIIRRPCLLATL*S--MGST*EKLSASLTTYSLPPAECAEP 170
+ LP LRR+ R N++RR L A + + + E+L SL T S +P
Sbjct: 457 IVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDP 516
Query: 169 MNPGEVMVRSR 137
+N ++R R
Sbjct: 517 VNEMLFIIRGR 527
>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
Length = 1055
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = +3
Query: 54 WKQFGRNYFTRYDYENCSSESCDEMMSV-LERTITSPG-------FMGSAHSAGGKEY 203
WK+ R+ D + ES DE+M++ + R+ G ++GSAH A +EY
Sbjct: 104 WKESKRHRLDDDDDNDDDEESEDELMAMRMRRSFDGSGVDIGKKAYLGSAHFANDREY 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,787
Number of Sequences: 28952
Number of extensions: 185935
Number of successful extensions: 480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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