Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0166
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    30   0.38 
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    28   1.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.5  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   3.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   4.6  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   4.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.1  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = +2

Query: 242 EIKMST*YHPDLEMNL*HVKAHLLIHVVKKESLKRKSHLSKMILKESR-SIQQLMEELIC 418
           E + S+  H + E +     A +LI V K+E  KRK  L   +LKE+  SI    ++   
Sbjct: 34  EQESSSEVHANPEPDNQDSNAEILIDVPKEERQKRKQELKDQLLKENEGSISSKKKKR-- 91

Query: 419 LKRYL---LKKGEVKMMI 463
           L +Y+   LKK EV  +I
Sbjct: 92  LDKYIENKLKKEEVASLI 109


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = -1

Query: 224 LMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVK 45
           + Y L+  +S+    N     + ++ +A   PNK T   ++++P  + S+L  ++ H   
Sbjct: 150 VQYLLSGQHSLSCRMNACVLCRMEQHVARAYPNKGTKRASAFKPSGIQSMLKVISSHFRP 209

Query: 44  NRLE 33
            R E
Sbjct: 210 YRQE 213


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 311  KGVLSHVKD-----SSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWK 159
            KG ++  KD     S  G   ++YSFLS  GNS+L      + S +    IPE  K
Sbjct: 959  KGTVATYKDICSLASESGNPDLIYSFLSIAGNSSLWQARKGLASGISYLGIPEDQK 1014


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 466  DSLKADRNRLILRQTSVGHVEGDKEVQN 549
            D L+ +RN  +L + ++GHV  D   +N
Sbjct: 993  DELEIERNNTLLERLAIGHVLDDSVFRN 1020


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 326 KKESLKRKSHLSKMILKESRSIQQLMEELI-CLKRYLLKKGEVK 454
           KKE+ +RK  L K    E  S ++ +EEL+  ++ +  + GE K
Sbjct: 69  KKETKERKEMLKKKCTDELESSKKKIEELVSSIESFQGENGEAK 112


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 549 CFPAFLLFISEEFTCNTNNFIENI*VFIGHVLSIDSLSYLSFTYS 683
           C  +FL +I+  F C  N +   + V   H  SI +  Y+S+TYS
Sbjct: 372 CAMSFLFYIT--FYCWDNYYYSFLQVV--HYTSITAAGYISYTYS 412


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 573  ISEEFTCNTNNFIENI*VFIGHVLSIDSLSYLSFTYSIHT--FSIPP 707
            I E+F    N F+EN  +F      +D     S T S+ T  F  PP
Sbjct: 1132 IMEQFRMQQNKFLENHALFEASDCEMDEADEFSVTSSVSTKLFLDPP 1178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,300
Number of Sequences: 5004
Number of extensions: 51880
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)