Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0166
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 42 5e-04
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 33 0.30
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 32 0.52
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 31 0.68
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 31 0.90
05_01_0346 - 2710420-2710683,2711595-2711672,2711861-2711888,271... 30 1.6
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 30 2.1
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109... 29 2.8
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 29 3.6
11_08_0026 + 27752519-27755441,27755538-27755923 29 3.6
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 29 4.8
11_06_0075 - 19829016-19829399 29 4.8
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281... 28 8.4
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/88 (27%), Positives = 42/88 (47%)
Frame = -1
Query: 281 SPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVAS 102
SPG DG F + + + + +G +PE ++ I K ++P D+
Sbjct: 908 SPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPI-DLKD 966
Query: 101 YRPIALSSVLTKVAEHLVKNRLEWFIEN 18
YRPI+L +V+ KV + NRL +++
Sbjct: 967 YRPISLCNVVYKVVSKCLVNRLRPILDD 994
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = -1
Query: 263 IMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIAL 84
+ S + H G F +L +G E ++ I+KP K N V YRPI+L
Sbjct: 936 VQASTVQH-GTQLKRRFFSLATGFTTSGADIERINRAYIVLIQKPGKE-NTVDGYRPISL 993
Query: 83 SSVLTKVAEHLVKNRLE 33
+ K+ ++ RL+
Sbjct: 994 QNCSVKILSKVLATRLQ 1010
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -1
Query: 212 LNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRLE 33
+N + + TG P ++ I ++P D+ +RPI+L +V+ KV + NRL
Sbjct: 428 VNPVTKIFQTGLTPMGVNDTAIVLILMSDQPV-DLKDFRPISLCNVVYKVVFKCLVNRLR 486
Query: 32 WFIEN 18
+++
Sbjct: 487 TVLDD 491
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = -1
Query: 137 KKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRLEWFI 24
+K + P + ++ +RPI+L +VL K+A ++ NRL+ F+
Sbjct: 176 RKVHNPEH-LSKFRPISLCNVLYKIASKVLANRLKLFL 212
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = -1
Query: 326 SLHELKGVLSHVK-DSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKSQE 150
++ E+ ++S + D +PG DG F+ + + L+ + GN+ +
Sbjct: 313 TVKEIDSLMSIIPADKAPGPDGFNGFFMKKCWHIIAQDYYRLV-AHFHAGNVDLEILNSS 371
Query: 149 VIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRLEWFI 24
I + V +RPI+L + K+ L+ RL+ I
Sbjct: 372 FITLVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVI 413
>05_01_0346 -
2710420-2710683,2711595-2711672,2711861-2711888,
2711973-2712022,2712112-2712165,2712240-2712281,
2712583-2712646,2713831-2713851,2714310-2714479,
2714746-2714910
Length = 311
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +2
Query: 299 KAHLLIHVVKKESLKRKSHLSKMILKESRSIQQLMEELICLKRYLLKKGEVKMMIKI 469
+A + I ++ K++ HL LK S + + +E C R+L+K VKM+I++
Sbjct: 222 EAKVYIVILLKKNKNTGHHLHHFHLKLSCQLGKKLEMEHCQVRFLIKNSFVKMLIQV 278
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 457 DDKDSLKADRNRLILRQTSVGHVEGDKEVQNVFQPSCFLSLRNLRVIQITSLRISKFSLD 636
+D D+ K+ + I GH+E K + F P F+SL+NL +Q+T KF L+
Sbjct: 125 NDTDTCKSCGQQSIRCPGHFGHIELAKPL---FNPLLFMSLKNL--LQVTCFHCHKFRLN 179
>08_02_0132 +
12908995-12909437,12909727-12910211,12910417-12910988,
12911080-12911211,12912184-12912939
Length = 795
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 179 NIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRLEWFIENNN 12
+IPE W+S + K P++P + + A +L +A V+ R ++ NNN
Sbjct: 138 SIPEAWESLQEKGHKAPSRPWTHTSRVKSAASWVILGMIARKPVRRRT--YMGNNN 191
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 254 SFLSHLGNSALMYFLNLINSVMVTGNIP 171
S HLGN + +Y LNL N+ +TG +P
Sbjct: 96 SITPHLGNLSFLYVLNLANT-SLTGTLP 122
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -1
Query: 245 SHLGNSALMYFLNLINSVMVTGNIPE 168
SHLGN + + LNL N+ +TG++PE
Sbjct: 96 SHLGNLSFLSVLNLTNA-SLTGSVPE 120
>12_01_0991 -
10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 582 EFTCNTNNFIENI*VFIGHVLSIDSLSYLSFTYSIHTFSIPP 707
+ +CN N+ + I VF+G S+ SL YL+ +Y S+PP
Sbjct: 405 DLSCNNFNWSQ-IPVFLG---SLPSLRYLNLSYGFFYGSVPP 442
>11_06_0075 - 19829016-19829399
Length = 127
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 332 PFSLHELKGVLSHV-KDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNI 174
PF+ E+ V++ + D SPG DG FL G+ F + + M+ ++
Sbjct: 63 PFAHEEINKVVASLPSDKSPGPDGFNGDFLKACGDIVKEDFTHFVKGFMMAQSV 116
>08_02_0919 -
22627147-22627326,22627646-22627726,22627827-22628103,
22629451-22629755,22629835-22629987,22630318-22631076
Length = 584
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 648 IDSLSYLSFTYSIHTFSIPPW 710
I ++ +LS ++H FS+PPW
Sbjct: 494 ISTIEFLSKQCNLHQFSLPPW 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,089,413
Number of Sequences: 37544
Number of extensions: 286353
Number of successful extensions: 810
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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