Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0166
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    54   1e-07
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    48   7e-06
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    48   7e-06
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    44   8e-05
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    36   0.022
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    31   0.81 
U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    31   1.1  
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    31   1.1  
AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical...    29   2.5  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41749-2|AAB52486.2|  308|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 30/86 (34%), Positives = 42/86 (48%)
 Frame = -1

Query: 275 GQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYR 96
           G DGI    +  L      +   L N  + T  IP+ WK   VI I KP K     +SYR
Sbjct: 347 GPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYR 406

Query: 95  PIALSSVLTKVAEHLVKNRLEWFIEN 18
           PI+L S + K+ E  +  R++  IE+
Sbjct: 407 PISLLSPIAKLLEKAILKRIKNSIES 432


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = -1

Query: 332 PFSLHELKGVL-SHVKDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKS 156
           PF   E++ VL S     + GQD I   FL    ++ +    +  N  + + N+P+ WK+
Sbjct: 546 PFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 605

Query: 155 QEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRL 36
            +   I K     N + +YRPI L  VL KV    + NR+
Sbjct: 606 SKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRM 644


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = -1

Query: 332 PFSLHELKGVL-SHVKDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKS 156
           PF   E++ VL S     + GQD I   FL    ++ +    +  N  + + N+P+ WK+
Sbjct: 285 PFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 344

Query: 155 QEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRL 36
            +   I K     N + +YRPI L  VL KV    + NR+
Sbjct: 345 SKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRM 383


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = -1

Query: 332 PFSLHELKGVL-SHVKDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKS 156
           PF   +++  L S     + GQD I   FL    ++ +    +  N  + + N+P+ WK+
Sbjct: 375 PFLPEKIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 434

Query: 155 QEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRL 36
            +   I K     N + +YRPI L  VL KV    + NR+
Sbjct: 435 SKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRM 473


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 332 PFSLHELKGVL-SHVKDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKS 156
           PF   E++  + S     + G D I   FL   G+  +       N  + +GNIP+ WK+
Sbjct: 395 PFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKT 454

Query: 155 QEVIAIKK 132
            +   I K
Sbjct: 455 SKTTLIFK 462


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 626 NLDILNEVICITRKFLRDKKQEGWKTFCTSLSPSTCPTEVWRSI 495
           NL ++   + I R F+RDKK     T  T ++PS  PT +  SI
Sbjct: 254 NLGLMISTVIIYRIFMRDKKS---ATIVTRVTPSVRPTSIIHSI 294


>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 635 SNENLDILNEVICITRKFLRDKKQEGWKTFCTSLSPSTCPTEVWRSIKRFR-SAFK 471
           ++ N D +N+VIC+ R  +R      WK        S    + W SI  FR SA K
Sbjct: 544 NDPNFDEMNDVICVRR--IRPPPDLAWKNVPALNELSKLMEDSWHSIPHFRHSALK 597


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 635 SNENLDILNEVICITRKFLRDKKQEGWKTFCTSLSPSTCPTEVWRSIKRFR-SAFK 471
           ++ N D +N+VIC+ R  +R      WK        S    + W SI  FR SA K
Sbjct: 544 NDPNFDEMNDVICVRR--IRPPPDLAWKNVPALNELSKLMEDSWHSIPHFRHSALK 597


>AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical
           protein Y18H1A.9 protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 290 KDSSPGQDGIMYSFLSHLGNSALMY--FLNLINSVMVTGNIPETWKSQEVIAIKKPNKPT 117
           +D + G+  + YSFL  L     ++  FL   N ++ T    ETW++ +VIA K    P+
Sbjct: 387 EDWAKGKAHVKYSFLFELRPEEQVWDGFLLAENQIIPTAR--ETWEAVKVIASKTIELPS 444

Query: 116 N 114
           N
Sbjct: 445 N 445


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = -1

Query: 215  FLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRL 36
            FL  INS++ +GN+P  +  QE+  +        + AS+   AL   L      LV   L
Sbjct: 2632 FLQAINSLLASGNVPGLFTQQELDGLVALVSEAANQASFTG-ALQQFLAHRIRSLVHVVL 2690

Query: 35   EWFIENNNF 9
               +E N+F
Sbjct: 2691 ILEVEANDF 2699


>U41749-2|AAB52486.2|  308|Caenorhabditis elegans Hypothetical
           protein F09E10.5 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 586 NSSEIKSRKAGKHFVLLYLLLRALQKFGAVLNDF--GLLSKNLYHHLH 449
           N  ++KS    +HFVL   +L  LQ F   ++ +  G + +  Y  LH
Sbjct: 77  NVEQVKSDSWKQHFVLDRCVLHMLQMFHETISSYHNGTVDEEFYRKLH 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,639,846
Number of Sequences: 27780
Number of extensions: 277945
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)