Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0166
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 639 VLSIDSLSYLSFTYSIHTFSIPPW 710
           VLSIDS++  S TY    F    W
Sbjct: 38  VLSIDSINEESMTYVADIFLAQSW 61


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 594 NTNNFIENI*VFIGHVLSIDSLSYLS 671
           N N FI NI V +G     D+ +Y+S
Sbjct: 185 NMNTFIANIAVDLGKGGCNDAFAYMS 210


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 415 LSKKVFVKEGGSEDDDKDSLKADRNRLILRQTSV 516
           L  KV  +   +EDD+   +  D+ +   R TSV
Sbjct: 362 LDSKVSARIEMNEDDNTSLVSLDKKQYTWRHTSV 395


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 65   VAEHLVKNRLEWFIENNN 12
            V EH  KN+ EW   +NN
Sbjct: 1495 VVEHKKKNQQEWNQVSNN 1512


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 21  FNKPFQTILHKMFSNLS 71
           F KPF+ IL+   SNL+
Sbjct: 434 FRKPFREILYFRCSNLN 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,183
Number of Sequences: 438
Number of extensions: 3697
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)