Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0166
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77530.1 68414.m09028 O-methyltransferase family 2 protein si...    34   0.11 
At1g77520.1 68414.m09027 O-methyltransferase family 2 protein si...    33   0.19 
At5g27500.1 68418.m03287 hypothetical protein hypothetical prote...    31   1.00 
At5g52280.1 68418.m06488 protein transport protein-related low s...    30   1.3  
At1g63140.2 68414.m07136 O-methyltransferase, putative similar t...    30   1.3  
At1g63140.1 68414.m07135 O-methyltransferase, putative similar t...    30   1.3  
At5g37170.1 68418.m04462 O-methyltransferase family 2 protein si...    28   7.0  
At5g04320.1 68418.m00424 expressed protein                             27   9.3  

>At1g77530.1 68414.m09028 O-methyltransferase family 2 protein
           similar to caffeic acid 3-O-methyltransferase GB:O23760
           [Clarkia breweri], [SP|Q00763] [Populus tremuloides]
          Length = 381

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -1

Query: 212 LNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLV 48
           L +I+++    N   TW S   IA+  PNKPTN  A   P+ L  +L  +  H +
Sbjct: 52  LGVIDTIAAASN--GTWLSPSEIAVSLPNKPTNPEA---PVLLDRMLRLLVSHSI 101


>At1g77520.1 68414.m09027 O-methyltransferase family 2 protein
           similar to caffeic acid 3-O-methyltransferase GB:O23760
           [Clarkia breweri], [SP|Q00763] [Populus tremuloides]
          Length = 381

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -1

Query: 212 LNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLV 48
           L +I+++   GN  +TW S   IA   P KPTN  A   P+ L  +L+ +  H +
Sbjct: 52  LGVIDTIAAAGN--DTWLSPCEIACSLPTKPTNPEA---PVLLDRMLSLLVSHSI 101


>At5g27500.1 68418.m03287 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 187

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 14/50 (28%), Positives = 33/50 (66%)
 Frame = +2

Query: 320 VVKKESLKRKSHLSKMILKESRSIQQLMEELICLKRYLLKKGEVKMMIKI 469
           ++  E +K +S +++++ + S SIQ+L E+ +C K  + K   +K+++K+
Sbjct: 75  IMANEIVKARSEVNEIVNELSASIQELKEDAMCSKMEIRK---LKVLVKV 121


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 347 KSHLSKMILKESRSIQQLMEELICLK 424
           K  L K  +KES+ IQ+L +E+ CLK
Sbjct: 287 KQSLRKQAIKESKRIQELSKEVSCLK 312


>At1g63140.2 68414.m07136 O-methyltransferase, putative similar to
           GI:2781394
          Length = 381

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 191 MVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLV 48
           M+T      W S   IA+  P KPTN  A   P+ L  +L  +A H +
Sbjct: 57  MITSVDDGVWLSPSEIALGLPTKPTNPEA---PVLLDRMLVLLASHSI 101


>At1g63140.1 68414.m07135 O-methyltransferase, putative similar to
           GI:2781394
          Length = 286

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 191 MVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLV 48
           M+T      W S   IA+  P KPTN  A   P+ L  +L  +A H +
Sbjct: 57  MITSVDDGVWLSPSEIALGLPTKPTNPEA---PVLLDRMLVLLASHSI 101


>At5g37170.1 68418.m04462 O-methyltransferase family 2 protein
           similar to caffeic acid 3-O-methyltransferase [Populus
           tremuloides][SP|Q00763]
          Length = 334

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 230 SALMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEH- 54
           S  M  L + NS+     +   W S   IA   P KPTN  A   P+ +  +L  +  H 
Sbjct: 30  SMQMQALRITNSLAFPMGV---WLSPSEIAFGLPTKPTNPEA---PMLIDRMLRLLVSHS 83

Query: 53  LVKNRLEWFIENN 15
           ++K RL    ENN
Sbjct: 84  ILKCRLVETGENN 96


>At5g04320.1 68418.m00424 expressed protein
          Length = 419

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 433 VKEGGSEDDDKDSLKADRNRLILRQTSVG 519
           V+E   E + KD  KAD N  + R++SVG
Sbjct: 365 VQECDQETESKDKPKADENEGMTRRSSVG 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,652,946
Number of Sequences: 28952
Number of extensions: 255394
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)