Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0165
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0164 + 15265878-15268701,15268782-15269200 30 1.8
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 29 4.1
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 29 4.1
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964... 28 7.2
10_08_0734 + 20195434-20196225 27 9.5
09_04_0598 + 18875270-18875437,18875547-18876179 27 9.5
02_02_0061 + 6468190-6471046,6471318-6471736 27 9.5
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 27 9.5
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 355 WFKNDSPVYEYDVESNELIDSSPTSI 432
W N + +Y DVE+N L D PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 331 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 480
GSP P +H F+N++ E ++ SN +SS I ++ T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 256 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 384
S +GP P+ HT T ++T A S P W K+ +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397
>01_01_1198 -
9643469-9643585,9643740-9643805,9643905-9644489,
9645159-9645994,9646597-9646783,9647572-9647737,
9648431-9648520,9649122-9649184,9649277-9649413,
9649835-9650349,9651130-9651231,9651581-9651602
Length = 961
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Frame = +1
Query: 208 IENGVQAKSDGSHKYLSITQGPLPS-----------YAHTPGTTIELTCEAAGSPAPSVH 354
I NG+ DG +LSIT G L + H PG + +A + +V
Sbjct: 249 IRNGI-VSYDGRKLFLSITNGSLVEVTELQPLRWTYHGHPPGGDVSYISDAGNARPGTVF 307
Query: 355 WFKNDSPVYEYDVES 399
+ +YE+D ES
Sbjct: 308 TVSSTGDLYEFDRES 322
>10_08_0734 + 20195434-20196225
Length = 263
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 232 SDGSHKYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELI 411
SDGS K + P +T TT T +AG+ + + SP Y+YD +
Sbjct: 38 SDGSDKQSPMATPP----PNTSSTTTTTTTGSAGNKTTAAAGSSSFSPSYDYDYVDTD-A 92
Query: 412 DSSPTSIARISSTL 453
D+S S +++ L
Sbjct: 93 DTSVGSTPSVAALL 106
>09_04_0598 + 18875270-18875437,18875547-18876179
Length = 266
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 82 QYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSI 261
+Y A+ + L+LLF VA L S LN+ L++ + G A DG + L +
Sbjct: 114 EYMMALKYVALLLLFLVAFLSHSLAICFLNEASFLINTSPTLLAGGDGAGDDGGRRLLGL 173
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 301 TTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISS 447
T+++L+ P P N + ++ VE+NEL S P+SI +SS
Sbjct: 259 TSLDLSSNNLVGPVPDT--IGNLYSIKQFHVENNELEGSLPSSIFNLSS 305
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +1
Query: 61 FFLRESHQYYRAVV--RMHLVLLFTVAALLGSCQSAHLNKHIKLLSDIDN-----SIENG 219
FFL+ + + +H +LL ++ L G+ ++ + LL DI+ ++E+
Sbjct: 2212 FFLKHAEAVGEEIPARELHEILLLSLQWLSGTMTNSSPVYPLHLLRDIETRVWLLAVESE 2271
Query: 220 VQAKSDGSHKYLSITQ 267
Q K+DG + S+TQ
Sbjct: 2272 SQCKADGEYAPSSVTQ 2287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,231,750
Number of Sequences: 37544
Number of extensions: 294668
Number of successful extensions: 817
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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