Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0165
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    32   0.005
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    32   0.005
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              31   0.007
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.066
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            27   0.15 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 295 PGTTIELTCEAAGSPAPSVHW 357
           PG  + L C AAG+P P V W
Sbjct: 435 PGPAVSLKCSAAGNPTPQVTW 455



 Score = 25.8 bits (54), Expect = 0.35
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +1

Query: 274 LPSYAHTPGTTIELTCEAAGSPAPSVHW 357
           +P      G T+ L C  AG P   + W
Sbjct: 525 IPKVTAVAGETLRLKCPVAGYPIEEIKW 552



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 307 IELTCEAAGSPAPSVHWFK 363
           + L C+A G P P++ W K
Sbjct: 727 VALHCQAQGVPTPTIVWKK 745



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +1

Query: 232 SDGSHKYLSITQGPLPSYAHTPGTTIE--------LTCEAAGSPAPSVHWFKND 369
           S G H + +  +GP  S+   P + +E        L C A GSP  ++ W   D
Sbjct: 17  SAGGHGFDAHLRGP--SFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTAD 68



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 298 GTTIELTCEAAGSPAPSVHWFK 363
           G T  L CE  G    +V W K
Sbjct: 822 GDTATLHCEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 295 PGTTIELTCEAAGSPAPSVHW 357
           PG  + L C AAG+P P V W
Sbjct: 435 PGPAVSLKCSAAGNPTPQVTW 455



 Score = 25.8 bits (54), Expect = 0.35
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +1

Query: 274 LPSYAHTPGTTIELTCEAAGSPAPSVHW 357
           +P      G T+ L C  AG P   + W
Sbjct: 525 IPKVTAVAGETLRLKCPVAGYPIEEIKW 552



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 307 IELTCEAAGSPAPSVHWFK 363
           + L C+A G P P++ W K
Sbjct: 723 VALHCQAQGVPTPTIVWKK 741



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +1

Query: 232 SDGSHKYLSITQGPLPSYAHTPGTTIE--------LTCEAAGSPAPSVHWFKND 369
           S G H + +  +GP  S+   P + +E        L C A GSP  ++ W   D
Sbjct: 17  SAGGHGFDAHLRGP--SFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTAD 68



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 298 GTTIELTCEAAGSPAPSVHWFK 363
           G T  L CE  G    +V W K
Sbjct: 818 GDTATLHCEVHGDTPVTVTWLK 839


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 313 LTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIAR 438
           + C  AG P P V W KND  +     +  +LI +    I +
Sbjct: 421 IRCHVAGEPLPRVQWLKNDEALNHDQPDKYDLIGNGTKLIIK 462


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +1

Query: 295 PGTTIELTCEAAGSPAPSVHW---FKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTR 465
           PG ++ L C A+G+P P + W    K  S      V     ++    S   ISS    T 
Sbjct: 407 PGPSMFLKCVASGNPTPEITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISS----TH 462

Query: 466 TTSQDVYTCL 495
           T    +Y C+
Sbjct: 463 TNDGGLYKCI 472



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 298 GTTIELTCEAAGSPAPSVHWFKND 369
           GT   + C+A G+P P + W + D
Sbjct: 18  GTGAVVECQARGNPQPDIIWVRAD 41



 Score = 26.2 bits (55), Expect = 0.27
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 298 GTTIELTCEAAGSPAPSVHWFKNDSPV 378
           G     TC   G+P  +V W K+  P+
Sbjct: 322 GRPATFTCNVRGNPIKTVSWLKDGKPL 348



 Score = 25.0 bits (52), Expect = 0.62
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +1

Query: 286 AHTPGTTIELTCEAAGSPAPSVHWFK--NDSP 375
           A   G+   + C+A G P P V W K   D+P
Sbjct: 689 AFAQGSDARVECKADGFPKPQVTWKKAAGDTP 720



 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 307  IELTCEAAGSPAPSVHW 357
            ++L C A G PAP V W
Sbjct: 1294 VKLPCLAVGVPAPEVTW 1310



 Score = 24.6 bits (51), Expect = 0.82
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +1

Query: 307 IELTCEAAGSPAPSVHWFK-NDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD- 480
           + L C A G P P   W+K  +       V+ NE        + ++S TLI+     +D 
Sbjct: 230 LPLLCPAQGFPVPVHRWYKFIEGSSRRQPVQLNE-------RVRQVSGTLIIREARVEDS 282

Query: 481 -VYTCL 495
             Y C+
Sbjct: 283 GKYLCI 288


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 298 GTTIELTCEAAGSPAPSVHWFKNDSPVYEY 387
           G  I   C A G P P + W K+   +Y +
Sbjct: 37  GRKITFFCMATGFPRPEITWLKDGIELYHH 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,020
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)