Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0164
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   1.2  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   2.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   4.8  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   6.3  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   8.4  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    25   8.4  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = +1

Query: 28  KSNDLDLMNNIVNLLTSIHTLFYMSLTEEIGDKQKPDHIYEGRDMTSLV-ILLQFLKHQL 204
           K NDL+L   ++N L  + T F              D+++E R +T L   +++  K  L
Sbjct: 687 KINDLELRGIVINSLCKLFTKF-----------SNFDYLFEDRTVTFLTDFIIRKQKAHL 735

Query: 205 TASDERQ--NLYEKLSPILTVLNKCARVRVQRKFLRKAVLPHLRDVSKP 345
           +A   +Q  N+  + SP    + +  R+   RK  ++  L +   V KP
Sbjct: 736 SADQCKQLANVLTQASPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKP 784


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 328 RDVSKPPEQGDELRNHLCRLLTTPVTSVRDLVAEFLFVL 444
           R V  PP+    LRN+   LLTT    +R ++ E L+ +
Sbjct: 356 RSVFAPPQLRFSLRNNTLPLLTTKRVFLRGVLEELLWFI 394


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 109  EEIGDKQKPDHIYEG-RDMTSLVILLQFLKHQLTASDERQNLYEKLSPILTVLNK 270
            EE+G   K  +  EG  D+  +V LL+ ++ Q +    R+NLY  L  ILTV  K
Sbjct: 1367 EELG---KSTYFMEGIHDV--IVGLLKGIQCQQSDESIRENLYGSLLSILTVFQK 1416


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 34  NDLDLMNNIVNLLTSIHTLFYMSLTEEIGD 123
           N+ DLM   V +   ++T FY S  +E+ D
Sbjct: 852 NNSDLMKGYVTVCIELYTDFYKSAYKEVFD 881


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 319 PHLRDVSKPPEQGDELRNHLCRLLTTPVTS 408
           PHLR V      G++LRN    ++T P TS
Sbjct: 291 PHLRAVENIRNSGNDLRN--TTVITLPSTS 318


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 176 MTSEVISLPS*IWSGFCLSPISSVRDI*NSVWMLVSRLTILFIKSKSFDLEE 21
           +T+++ +LPS +    C +P+S    I + ++     L IL + ++ F   E
Sbjct: 189 LTAKIYALPSILTLSACTAPLSEALTIWDFLFAYGIHLNILCVIAQMFIFRE 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,284
Number of Sequences: 5004
Number of extensions: 36371
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)