Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0164
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0075 - 1093514-1093768,1093988-1094127,1094129-1094174 30 0.90
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 30 0.90
08_02_0574 - 18867623-18868033,18869751-18870209 30 1.2
01_06_0817 + 32214729-32215078,32215247-32215348,32216559-32217951 29 2.7
01_05_0071 + 17842918-17843222,17843391-17843646,17844257-178445... 29 2.7
10_08_0771 + 20463872-20465113 28 3.6
06_02_0022 - 10686901-10687506,10687730-10688680 27 6.3
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 27 8.4
01_05_0245 + 19872219-19872231,19872298-19872395,19872449-198725... 27 8.4
>09_01_0075 - 1093514-1093768,1093988-1094127,1094129-1094174
Length = 146
Score = 30.3 bits (65), Expect = 0.90
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 398 GVVSSRHRWFRSSSPCSGGFDTSRRCGSTALR 303
G R RW R+ SPC GG ++ R G A R
Sbjct: 26 GEARIRDRWRRTRSPCDGGGNSWRDSGRAARR 57
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 30.3 bits (65), Expect = 0.90
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 56 ILLIY*QASTHCFICP*QKKLETNKSLTIFMKVEI--*LHWS 175
IL+ + S +CF+CP +NK L+ F +E+ L+WS
Sbjct: 262 ILISFMLVSLNCFLCPNSSLAPSNKYLSAFENIELIDNLNWS 303
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 263 SINVPVYASNVSSYVKPCCRISATCRSPPSRATSCGTTCAGC*RRPSPASGTW*RSSCSY 442
S+ +P A +V+ PC S T +P S +T C G S + + S ++
Sbjct: 73 SLCLPRAAGSVTPAAIPCAGSSTTASAPTSTSTRAAPACTGRSSSTGLPSTSGHQGSAAF 132
Query: 443 SARKK 457
+ RK+
Sbjct: 133 ACRKR 137
>01_06_0817 + 32214729-32215078,32215247-32215348,32216559-32217951
Length = 614
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 313 VLPHLRDVSKPPEQGDELRNHLCRLLTTPVTSVRDLVAEFLFVLCKEKVSRMVKYTGFGN 492
++PH D PP D L L V +LV LC+ +V +++ TGF N
Sbjct: 380 LMPH--DPDAPPLPRDAPPPRLVDLADAEVGREYELVITTYAGLCRYRVGDILQVTGFHN 437
Query: 493 AA 498
AA
Sbjct: 438 AA 439
>01_05_0071 +
17842918-17843222,17843391-17843646,17844257-17844520,
17844632-17845143,17845222-17845392,17845475-17845763,
17845849-17845959
Length = 635
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 223 QNLYEKLSPILTVLNKCARVRVQRKFLRKA---VLPHLRDVSKPPEQGDELRNHLCRLLT 393
+N Y+ +PI +++ VQR LRK L H +D + GD+ R H+C +
Sbjct: 527 KNAYD-WTPIQLAIDEARAQYVQRGGLRKTGHDTLIHKKDFLVKQQIGDQCRFHVCHNMR 585
Query: 394 TPVTSVRDLVAEF 432
T +A+F
Sbjct: 586 LLYTEKVKTLADF 598
>10_08_0771 + 20463872-20465113
Length = 413
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 269 NVPVYASNVSSYVKPCCRISATCRSPPSRATSCGTTCA 382
++PV+ N SS KP +A C S P+R+ S G C+
Sbjct: 100 DLPVFVPNASSTFKPEPCGTAVCESIPTRSCS-GDVCS 136
>06_02_0022 - 10686901-10687506,10687730-10688680
Length = 518
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 425 ATKSLTLVTGVVSSRHRWFRSSSPCSGGFDTSRRCG 318
A K + L+ G + R W + GG D + +CG
Sbjct: 467 AQKLIPLIIGTLLHRFEWELPADAKEGGIDMTEKCG 502
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = +1
Query: 103 LTEEIGDKQKPDHIYE------GRDMTS--LVILLQFLKHQLTASDERQNLYEKL 243
L + IGD+ K + E G+D++ L+ + QF + + S+ R+NLYE L
Sbjct: 234 LADLIGDEDKAKEVVEAAKASMGQDLSEVDLMNVKQFAQRVMNLSEYRKNLYEYL 288
>01_05_0245 +
19872219-19872231,19872298-19872395,19872449-19872592,
19873322-19873351,19873463-19873525,19873608-19873663,
19874040-19874096,19874338-19874372,19874698-19874787,
19874855-19874901,19875341-19875421
Length = 237
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 344 GFDTSRRCGSTALRKNLRWTRTRAHLLR 261
G DTSR G+ + K RW RT L+
Sbjct: 89 GADTSRELGARSSEKAARWIRTMESALK 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,119,566
Number of Sequences: 37544
Number of extensions: 238933
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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