Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0164
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   31   0.40 
SB_6219| Best HMM Match : REJ (HMM E-Value=8.1)                        29   1.6  
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          29   2.8  
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    28   4.9  
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              27   8.6  
SB_26365| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_35717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 428  SATKSLTLVTGVVSSRHRWFRSSSPCSGGFDTSRRCGSTALRKNLRWTRTRAHLLRTVNI 249
            S++++ ++ +    SR R  RSS   S GFDT+   GS +          RAH LR    
Sbjct: 1001 SSSETNSIESSPHQSRRRSARSSGTSSSGFDTASSRGSYSSEGFRTIDPARAHALRNTTA 1060

Query: 248  G 246
            G
Sbjct: 1061 G 1061


>SB_6219| Best HMM Match : REJ (HMM E-Value=8.1)
          Length = 576

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 181 LQFLKHQLTASDER--QNLYEKLSPILTVLNKCARVRVQRKFLRKAVLPHLRDVSKPPEQ 354
           L  +KH   A   R  Q L EKL  +      C  V V+  F+ +  + H R++    E 
Sbjct: 451 LAAIKHVKAAFHIRLAQQLKEKLGLVAATSPTCVDV-VKDGFVFRVKIVHYREMVLLQEP 509

Query: 355 GDELRNHL 378
           GDE+ +HL
Sbjct: 510 GDEIDSHL 517


>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 488 PNPVYFTM--RLTFSLQSTNKNSATKSLTLVTGVVSSRHRWFRSSSPCSGGF 339
           PNP+  T   R+TFS +     +A   +     V   +  WFR + PCSG F
Sbjct: 40  PNPIRLTKGSRITFSGRIGVYGNA--GVRYKINVKLQKKAWFRITVPCSGNF 89


>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 256 TVLNKCARVRVQRKFLRKAVLPHLRDVSKPPEQGDELRNHLCRL 387
           TVL KC    ++RK L K     L+   +  EQ +++ + L +L
Sbjct: 187 TVLEKCTSTYIKRKLLEKGQTFTLKKALEIAEQCEKIESQLAKL 230


>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 275 PVYASNVSSYVKPCCRISATCRSPPSRATSCGTTCAG 385
           P Y       ++PC    AT  SPP     C T C G
Sbjct: 21  PCYGPVPHPLLRPCAPPLATALSPPPATALCPTPCYG 57


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 109  EEIGDKQKPDHIYEGRDMTSLVILLQFLKHQLTAS 213
            + I D+  P  + E  + T  +   ++LKHQLTA+
Sbjct: 2557 DSIDDQTAPSSVQEVPNQTLTLFSYKYLKHQLTAT 2591


>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 301 LRKAVLPHLRDVSKPPEQGDELRNHLCRLLTTP 399
           LR+A LP+ R +  PP+    L+ H    L TP
Sbjct: 629 LREADLPNNRLIETPPKLAKRLQPHQSEKLATP 661


>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = +1

Query: 247 PILTVLNK--CARVRVQRKFLRKAVLP-HLRDVSKPPE-QGDELRNHLCRLLTTPVTS 408
           P L  + K    R+R++R  L  ++ P   + VS  PE  G  L+NH+ + LTTP ++
Sbjct: 19  PQLNFIGKKTAGRLRLERSALNHSLDPCGCKIVSWFPEFNGSWLQNHIIQNLTTPTSN 76


>SB_26365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 455 FSLQSTNKNSATKSLTLVTGVVSSRHRWFRSSSPCS-GGFDTSRRCGSTA 309
           FS    N NS+  S   V G  +S   W   SS C  G  + +R C + A
Sbjct: 180 FSSNKPNNNSSLFSSAPVDGGFTSWSSWSNCSSKCGIGTHNRTRNCTNPA 229


>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 259 VLNKCARVRVQRKFLRK--AVLPHLRDVSKPPEQGDE 363
           ++ KC   +++RKFL K  A L  L+DV++  E  +E
Sbjct: 148 LIEKCLEYKLRRKFLEKVNASLKDLQDVARAYEAVEE 184


>SB_35717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
 Frame = +1

Query: 55  NIVNLLTSIHTLFYMSLTEEIGDKQKP---DHIYEGRDMTSL-VILLQFLKHQLTASDER 222
           NI+N LT   + F   +       Q        + G+  T++ ++ L  L     A   R
Sbjct: 22  NIINTLTRRQSFFIRLIPRSFNHPQTKRCRTACFSGKSATTVRIVTLNGLLRYFVA---R 78

Query: 223 QNLYEKLSPILTVLNKCARVRVQRKFLRKAVLP 321
           +N Y  + P+   LN+C  +   R      +LP
Sbjct: 79  ENKYHSVQPLSCQLNQCKLLIAVRTVTLYGLLP 111


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/85 (23%), Positives = 42/85 (49%)
 Frame = +1

Query: 220 RQNLYEKLSPILTVLNKCARVRVQRKFLRKAVLPHLRDVSKPPEQGDELRNHLCRLLTTP 399
           + ++YE L P +  L+K +   + + F+ +   P + ++SKP     EL       L+ P
Sbjct: 565 KPSIYELLEPSIYELSKPSIYELSKPFMYELSKPSIFELSKPSIY--ELLEPSIYELSKP 622

Query: 400 VTSVRDLVAEFLFVLCKEKVSRMVK 474
             S+ +L    ++ L K  + +++K
Sbjct: 623 --SIYELSKPSIYELSKPPIYKLIK 645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,000
Number of Sequences: 59808
Number of extensions: 277561
Number of successful extensions: 1147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)