Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0164
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF288812-1|AAG10199.1| 566|Caenorhabditis elegans synembryn pro... 75 4e-14
AC084158-34|AAK68564.1| 566|Caenorhabditis elegans Resistance t... 75 4e-14
U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifyi... 31 0.35
U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical pr... 31 0.46
AL034364-4|CAA22250.2| 290|Caenorhabditis elegans Hypothetical ... 29 1.4
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 4.3
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 4.3
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z54218-3|CAA90955.2| 654|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 27 5.7
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 27 5.7
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 27 7.6
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 10.0
AC024817-48|AAM97976.1| 401|Caenorhabditis elegans Hypothetical... 27 10.0
>AF288812-1|AAG10199.1| 566|Caenorhabditis elegans synembryn
protein.
Length = 566
Score = 74.5 bits (175), Expect = 4e-14
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Frame = +1
Query: 211 SDERQNLYEKLSPILTVLNK-CARVRVQRKFLRKAVLPHL--RDVSKPPEQGDELRNHLC 381
S E L + + P VL + C + R++ R V+P L +V K PE+ + LR +
Sbjct: 351 SAEASTLTDLVGPYFQVLARLCTDSKYVRRYCRIRVIPPLVSEEVQKRPEENNTLRGRIA 410
Query: 382 RLLTTPVTSVRDLVAEFLFVLCKEKVSRMVKYTGFGNAA 498
R++ P +S +D+ AEFLF++CK V+RM+KY GFG++A
Sbjct: 411 RIMMLP-SSTKDVAAEFLFIICKRSVNRMIKYLGFGHSA 448
>AC084158-34|AAK68564.1| 566|Caenorhabditis elegans Resistance to
inhibitors of cholinesteraseprotein 8, isoform a
protein.
Length = 566
Score = 74.5 bits (175), Expect = 4e-14
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Frame = +1
Query: 211 SDERQNLYEKLSPILTVLNK-CARVRVQRKFLRKAVLPHL--RDVSKPPEQGDELRNHLC 381
S E L + + P VL + C + R++ R V+P L +V K PE+ + LR +
Sbjct: 351 SAEASTLTDLVGPYFQVLARLCTDSKYVRRYCRIRVIPPLVSEEVQKRPEENNTLRGRIA 410
Query: 382 RLLTTPVTSVRDLVAEFLFVLCKEKVSRMVKYTGFGNAA 498
R++ P +S +D+ AEFLF++CK V+RM+KY GFG++A
Sbjct: 411 RIMMLP-SSTKDVAAEFLFIICKRSVNRMIKYLGFGHSA 448
>U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 1 protein.
Length = 505
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 218 SDRTFTKNYLRY*RSSINVPVYASNVSSYVKPCCRISATCRSPPSRATSCGTTCA 382
S ++ L + +SS N PV+++N S + A PP+ C +TCA
Sbjct: 429 SPYSYPSTPLNHFQSSSNSPVFSNNHSKFNTEAVTCEAGMLCPPTIVVQCPSTCA 483
>U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical
protein C02G6.2 protein.
Length = 816
Score = 31.1 bits (67), Expect = 0.46
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 172 PVKSYLYLHKYGQAFVCLQFLLSGTYKTVCGCLLVD*QYYSLNLNHLIWR 23
P + Y L ++ Q F+C QF S T + VC VD ++ S NLN WR
Sbjct: 117 PDQLYGALDRFVQFFLCPQFTKSATEREVCA---VDSEHLS-NLNSDYWR 162
>AL034364-4|CAA22250.2| 290|Caenorhabditis elegans Hypothetical
protein W06D4.2 protein.
Length = 290
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 497 AALPNPVYFTMRLTFSLQSTNKNSATKSLTLVTGVVS 387
AALP +Y+++R SL T + S S TL G+ S
Sbjct: 123 AALPVYIYYSIRKNSSLDDTERRSILFSSTLFFGIFS 159
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 470 TMRLTFSLQSTNKNSATKSLTLVTGVVSSRHRWFRSSSPCSGGFDTSRRCGS 315
T + T + +++ + T++ T S W S+ C G SRRCG+
Sbjct: 502 TRQTTTTARTSTTTTTTQAPPTTTTSTSQCASWSACSAQCGGCGTQSRRCGT 553
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 470 TMRLTFSLQSTNKNSATKSLTLVTGVVSSRHRWFRSSSPCSGGFDTSRRCGS 315
T + T + +++ + T++ T S W S+ C G SRRCG+
Sbjct: 502 TRQTTTTARTSTTTTTTQAPPTTTTSTSQCASWSACSAQCGGCGTQSRRCGT 553
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 314 CCRISATCRSPPSRATSCGTTCAGC 388
CC TC P CG C GC
Sbjct: 106 CCTRCCTCCRPCCCGCGCGCGCCGC 130
>Z54218-3|CAA90955.2| 654|Caenorhabditis elegans Hypothetical
protein F37B12.2 protein.
Length = 654
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 130 KPDHIYEGRDMTSLVILLQFLKHQLTASDERQNLYEKLSPILTVL 264
KPDHIY + + Q DE + LY++L+PI +L
Sbjct: 237 KPDHIYMDHMGFGMGCCCLQVTFQAVNVDEARWLYDQLTPITPIL 281
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 314 CCRISATCRSPPSRATSCGTTCAGC 388
CC TC P CG C GC
Sbjct: 92 CCTRCCTCCRPCCCGCGCGCGCCGC 116
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 314 CCRISATCRSPPSRATSCGTTCAGC 388
CC TC P CG C GC
Sbjct: 95 CCTRCCTCCRPCCCGCGCGCGCCGC 119
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 314 CCRISATCRSPPSRATSCGTTCAGC 388
CC TC P CG C GC
Sbjct: 107 CCTRCCTCCRPCCCGCGCGCGCCGC 131
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 314 CCRISATCRSPPSRATSCGTTCAGC 388
CC TC P CG C GC
Sbjct: 107 CCTRCCTCCRPCCCGCGCGCGCCGC 131
>Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical
protein ZC434.9b protein.
Length = 532
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 398 GVVSSRHRWFRSSSPCSGGFDTSR 327
GVV + RWFR C GG D +R
Sbjct: 267 GVVCKKDRWFRDR--CCGGVDLNR 288
>Z75714-5|CAB00065.2| 581|Caenorhabditis elegans Hypothetical
protein ZC434.9a protein.
Length = 581
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 398 GVVSSRHRWFRSSSPCSGGFDTSR 327
GVV + RWFR C GG D +R
Sbjct: 267 GVVCKKDRWFRDR--CCGGVDLNR 288
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 169 LVILLQFLKHQLTASDERQNLYEKLSPILTVLN--KCARVRVQRKFLRKAVLPHLRDVSK 342
++I+L LK+ D+ N Y+ ++PI V+N K A+ + F+ K V +D+++
Sbjct: 808 ILIVLGVLKYVEDHVDDNANAYKPMNPIEMVVNPTKYAK-KSSNGFMEKVV----KDIAE 862
Query: 343 PPEQGDELRN 372
P+ D +N
Sbjct: 863 YPKPVDPPKN 872
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 296 SSYVKPCCRISA-TCRSPPSRATSCGTTCA 382
SS V CC A C PP + +SC ++ A
Sbjct: 763 SSVVNRCCPTRAYICSLPPQQGSSCSSSAA 792
>AC024817-48|AAM97976.1| 401|Caenorhabditis elegans Hypothetical
protein Y54G2A.35 protein.
Length = 401
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 401 TGVVSSRHRWFRSSSPCSGGFDTSRRCGSTALRKNLRWTRT 279
T +++ +W+R S+ S T ++C +LR +R RT
Sbjct: 283 TNIINHITQWWRRSTVRSPNPSTRKKCMRRSLRTEIRVART 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,030,163
Number of Sequences: 27780
Number of extensions: 204724
Number of successful extensions: 617
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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