Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0164
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.1  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 154 YLHKYGQAFVCLQFLL 107
           +L +YGQ+ V L FLL
Sbjct: 72  FLRRYGQSAVGLTFLL 87


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 58  IVNLLTSIHTLFYMSLTEEIGDKQKPDHIYEG 153
           I  L T +HT   +  TE   D+QK + + EG
Sbjct: 19  IEELKTRLHTEQSVCKTETGIDQQKANDVIEG 50


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 435  QELRYQVPDAGD 400
            + LRY +P AGD
Sbjct: 1198 ERLRYAIPSAGD 1209


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 275 PVYASNVSSYVKPCCRISATCRSPPSRATS 364
           PV ASN   Y   C    A C S  S   S
Sbjct: 116 PVCASNGKIYANHCELHRAACHSGSSLTKS 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,663
Number of Sequences: 438
Number of extensions: 2760
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)