Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0160
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 63 3e-11
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 5.5
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 7.3
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 25 7.3
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.6
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 9.6
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.6
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 63.3 bits (147), Expect = 3e-11
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 6/164 (3%)
Frame = +3
Query: 57 DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXH-----IPDPDATKXXXX 221
DWD P+ I DP+A KPEDW IP +
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPS-EIINPKCI 327
Query: 222 XXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICA 401
I NP+Y+G W+P I NP + G W +I NP+Y D + +
Sbjct: 328 EGAGCGEWKPPMIRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYG 387
Query: 402 VGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEKKM 530
VG +LW ++ F + + A+ G E + + E+++
Sbjct: 388 VGFELWTMQPNIRFSNIYVGHSIEDAERLGNETFLPKLKAEREL 431
Score = 47.2 bits (107), Expect = 2e-06
Identities = 41/133 (30%), Positives = 48/133 (36%), Gaps = 14/133 (10%)
Frame = +3
Query: 3 TYEVLIDNEKVESGDL*ADW--DFLPPKKIKDPEAKKPEDW--XXXXXXXXXXXXXXXXX 170
T+EV I+ + V G L D+ LPP +I DPE KP DW
Sbjct: 213 TFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDE 272
Query: 171 XXXXHIPDPDATKXXXXXXXXXXXXXXXXIDNP-----DYKGVWAPKQIDNP-----AYK 320
IPDPDA K P + G W P +I NP A
Sbjct: 273 DAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGC 332
Query: 321 GPWVHPEIDNPEY 359
G W P I NP Y
Sbjct: 333 GEWKPPMIRNPNY 345
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 426 KSGTIF-DDFLITDDPAAAKERGEVIKKRQEG 518
KS T+F D+ IT PA+ K+R KK+ G
Sbjct: 20 KSETVFLDEAAITKPPASKKKRKNRKKKKNNG 51
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 57 DWDFLPPKKIKDPEAKKPEDW 119
DWD +P ++ K EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 172 TSLNTFQIQMPPNLK 216
T++NT++ Q PPNLK
Sbjct: 171 TAMNTYENQKPPNLK 185
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -1
Query: 368 IRSVLWVVDFGMDPWAFVSWVINL 297
+ +LW DF ++P + SW++++
Sbjct: 456 VHRILWRYDFNINPESVESWLLDI 479
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 279 GVWAPK-QIDNPAYKGPWVHPEIDNP 353
G+ PK +D +Y G W P+ D+P
Sbjct: 130 GLGEPKFNVDGTSYDGDWGRPQNDSP 155
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 332 DPWAFVSWVI-NLFWCPNALVVWVV 261
D ++ SW I N+ W P LV W++
Sbjct: 7 DSFSGKSWTIDNVQWTPQNLVAWIM 31
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 312 AYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLD 413
A + PW EID+P++ D+ ICA+ LD
Sbjct: 1201 ASENPWFWFEIDSPKFISDT---LEAMICAIFLD 1231
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 69 LPPKKIKDPEAKKPEDW 119
LP + K P AKKPED+
Sbjct: 168 LPSPEYKAPPAKKPEDY 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,862
Number of Sequences: 5004
Number of extensions: 46057
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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