Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0160
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 159 2e-39
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 146 1e-35
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 139 2e-33
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 137 8e-33
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 77 2e-14
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 45 5e-05
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 38 0.007
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 28 5.7
05_01_0039 + 270145-270224,270347-270417,271075-271180,271837-27... 28 7.5
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200 27 9.9
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497 27 9.9
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 27 9.9
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 159 bits (385), Expect = 2e-39
Identities = 79/176 (44%), Positives = 98/176 (55%), Gaps = 2/176 (1%)
Frame = +3
Query: 3 TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
TY +LIDN + +SG + WD LPPK+IKDPEAKKPEDW
Sbjct: 191 TYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIP 250
Query: 183 -HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY 359
IPDPDA K I NP+YKG W K+I NP Y+G W P IDNP++
Sbjct: 251 KEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDF 310
Query: 360 TPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 524
D +Y D + +G++LWQVKSGT+FD+FLITDDP AK E K ++ EK
Sbjct: 311 KDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGKHKDAEK 366
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 146 bits (354), Expect = 1e-35
Identities = 72/175 (41%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Frame = +3
Query: 6 YEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX- 182
Y +LIDN + ++G + DW+ +PPK +DPEAKKPEDW
Sbjct: 199 YSILIDNTEKQTGSIYDDWNIIPPKNKRDPEAKKPEDWDDNEYIPDPEDKKPEGYDDIPK 258
Query: 183 HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYT 362
I DP+ATK I NP+YKG W K++ NP YKG W P I NP+Y
Sbjct: 259 EITDPEATKPEDWDDEEDGEWTAPTIPNPEYKGPWNQKKLKNPNYKGKWKAPLIPNPDYK 318
Query: 363 PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 524
D +Y D + +G++LWQVKSGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 319 DDPYIYAFDSLNHIGIELWQVKSGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 373
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 139 bits (337), Expect = 2e-33
Identities = 67/165 (40%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
Frame = +3
Query: 3 TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
+Y +L+DN + ESG + DWD LPP+KIKD AKKP+DW
Sbjct: 189 SYSILVDNRERESGSMYTDWDILPPRKIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIP 248
Query: 183 -HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY 359
IPDP K I NP YKG W K+I NP YKG W P IDNPE+
Sbjct: 249 KEIPDPKDKKPDTWDDDDDGIWKPRMIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEF 308
Query: 360 TPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERGE 494
D +LY + +G+++WQVK+G++FD+ LI DDP A++ E
Sbjct: 309 EDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARKAAE 353
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 137 bits (331), Expect = 8e-33
Identities = 70/177 (39%), Positives = 93/177 (52%), Gaps = 2/177 (1%)
Frame = +3
Query: 3 TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
+Y +L+DN + E G + DWD LPP+KIK+ AKKP+DW
Sbjct: 189 SYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVKPEGYDSIP 248
Query: 183 -HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY 359
IPDP K I NP+YKG W K+I NP YKG W P IDNPE+
Sbjct: 249 KEIPDPKDKKPESWDDDDDGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKIPWIDNPEF 308
Query: 360 TPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKK 527
D +LY + VG+++WQVK+G++FD+ LI DDP A+ EV +E EK+
Sbjct: 309 EDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEVRAANKEAEKE 365
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 76.6 bits (180), Expect = 2e-14
Identities = 51/168 (30%), Positives = 69/168 (41%), Gaps = 12/168 (7%)
Frame = +3
Query: 57 DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPD----PDATKXXXXX 224
DWD P +I+D EA KPE W P
Sbjct: 246 DWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWEAPKIDNPKCEE 305
Query: 225 XXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAV 404
NP YKG W IDNP YKG W EI NPEY + + D I A+
Sbjct: 306 APGCGEWKRPMKQNPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYF-ELDKPDSDPIAAI 364
Query: 405 GLDLWQVKSGTIFDDFLITDDPAAA--------KERGEVIKKRQEGEK 524
G+++W ++ G +FD+ LI DD A K + EV K++++ E+
Sbjct: 365 GIEIWTMQDGILFDNILIADDEKVATSILEKSWKPKYEVEKEKEKAEE 412
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +3
Query: 6 YEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKK 107
Y +LIDN + +G + D D LPPKK KDPEAKK
Sbjct: 545 YSILIDNTEKRTGSIYGDCDNLPPKKKKDPEAKK 578
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 420 QVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 524
+VKSGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 72
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 389 VALVQV*IRSVLWVVDFGMDPWAFVSWVINL-FWCPNALVVWVVNHR 252
V VQ + +W+ + P W+ +L F+C VVWV+ HR
Sbjct: 565 VVAVQKETSTSMWIF---LQPLTTSLWLASLAFFCFTGFVVWVIEHR 608
>05_01_0039 +
270145-270224,270347-270417,271075-271180,271837-271969,
272075-272160,272359-272527
Length = 214
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 284 NALVVWVVNHRWLPFSVHLIIPVFRFGGI 198
NA+ V V+N P + LI+P RFG +
Sbjct: 69 NAVTVMVLNFVVTPLELSLIVPFLRFGEV 97
>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
Length = 405
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 481 LAAAGSSVIRKSSKMVPDLTCHKSRPTAQISSRLYRFESGVYSGLSISGW 332
L A+ S ++ +C +RP A + SRL+R +S +Y+ SG+
Sbjct: 10 LRASSSPASATAAASSSSSSCCLARPRASLESRLHRRKSFLYTSSPKSGF 59
>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
Length = 405
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 481 LAAAGSSVIRKSSKMVPDLTCHKSRPTAQISSRLYRFESGVYSGLSISGW 332
L A+ S ++ +C +RP A + SRL+R +S +Y+ SG+
Sbjct: 10 LRASSSPASATAAASSSSSSCCLARPRASLESRLHRRKSFLYTSSPKSGF 59
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 73 RLRKSRTLKPRNQKTGMTSPLFQTPKTR---SLRIGTSLN 183
RLR + + P++ KT SPL +T ++ SL++G S+N
Sbjct: 228 RLRYAPKIVPKSVKTSSDSPLDRTSVSKRPDSLKLGMSIN 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,661
Number of Sequences: 37544
Number of extensions: 326374
Number of successful extensions: 993
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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