Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0160
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 206 1e-53
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 73 2e-13
SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30) 33 0.20
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 31 0.62
SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23) 30 1.4
SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2) 30 1.9
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08) 29 2.5
SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36) 29 4.4
SB_8437| Best HMM Match : zf-C2H2 (HMM E-Value=0.0095) 29 4.4
SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36) 28 5.8
SB_27655| Best HMM Match : 7tm_1 (HMM E-Value=2.90069e-43) 28 5.8
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 28 7.7
SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 28 7.7
SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 206 bits (503), Expect = 1e-53
Identities = 100/177 (56%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Frame = +3
Query: 3 TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
TYEV IDNEKVESG+L DWDFLPPK IKDPEAKKPEDW
Sbjct: 864 TYEVKIDNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQ 923
Query: 183 HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYT 362
+IPDPDA K IDNP+YKG W PKQIDNP YKG WVHPEIDNPEY
Sbjct: 924 NIPDPDAKKPEDWDDEIDGEWEPPMIDNPEYKGEWKPKQIDNPNYKGEWVHPEIDNPEYK 983
Query: 363 PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKKM 530
D LY +I A+G DLWQVKSGTIFD+ L+TD A++ E K +EGEKKM
Sbjct: 984 ADDKLYMYKDIGAIGFDLWQVKSGTIFDNVLVTDSVEHAEQFAKETFDKTKEGEKKM 1040
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 73.3 bits (172), Expect = 2e-13
Identities = 47/149 (31%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Frame = +3
Query: 57 DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX----HIPDPDATKXXXXX 224
DWD +KI DP+A+KP+DW ++PDP+ K
Sbjct: 142 DWD--EREKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGWLDDEPEYVPDPNGIKPEDWD 199
Query: 225 XXXXXXXXXXXIDNPDYK----GVWAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDE 392
I NP + G W P DNP YKG W P IDNP Y
Sbjct: 200 DEEDGEWEAPQIANPKCEKVGCGEWKPPMADNPEYKGKWSAPLIDNPNYK---------- 249
Query: 393 ICAVGLDLWQVKSGTIFDDFLITDDPAAA 479
VGL+LW + S +FD+ ++T+D A A
Sbjct: 250 -VGVGLELWSMTSDILFDNVIVTNDKAVA 277
>SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)
Length = 227
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = -1
Query: 227 IIPVFRFGGIWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFLG 99
++ +F GGIW++ R + IL+L++F + L++ V +FLG
Sbjct: 167 MVVIFCMGGIWVYPFMRKLNILQLVLF-FTGAYLLVAVVYFLG 208
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 31.5 bits (68), Expect = 0.62
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Frame = +1
Query: 100 PRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQTTR 279
P K T+P T T+ T + P K T ++ L+TQ T
Sbjct: 379 PTKAKPPTTTPSKATAPISDPMTTTTPTTTKATTPTTTKATASTQTAAEANTFLSTQKTD 438
Query: 280 AFGHQNRLIT-----QLTKAHGSIPKSTTQSTLLIQTCTSATKSALSVS 411
A Q+ T Q TKA ++ STT++T T T+ + LS S
Sbjct: 439 ATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTS 487
>SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)
Length = 689
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 285 WAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVK 428
W KQ+ A++ W +NP + D+NLY+ + + G+ WQV+
Sbjct: 640 WLDKQMSFIAFQEGWAL-YAENPILSHDTNLYEDNVLQRYGMLKWQVR 686
>SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2)
Length = 371
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 190 QIQMPPNLKTGMMRWTENGSHL*LTTQTTRAFGHQNRL 303
+I MP L++G +W +NGS + T++A+G+ N L
Sbjct: 289 RIAMPSKLQSGS-QWQQNGSSNQEASTTSQAYGYTNEL 325
>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
Length = 317
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 226 MRWTENGSHL*LTTQTTRAFGHQNRLITQLTKAH-GSIPKSTTQSTLLIQTCTSATKSAL 402
+++ E G H + + F H+N+L + K H S+ TL + + T S +
Sbjct: 243 LKYHEKGCHPCVCNECNETFDHENKLKRHINKKHAASLKCGDCGKTLQRKETSLGTASPI 302
Query: 403 SVSIC 417
S +C
Sbjct: 303 SSPLC 307
>SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36)
Length = 407
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 365 RSVLWVVDFGMDPWAFVSWVINLFWCPNALVVWVVNHRWLPFSVHLIIPVF 213
R VL ++D W + +++ L +CP+ L + W+ V IIP++
Sbjct: 303 RYVLMIIDSVCTGWFTLEFLLRLVFCPSKLKFILTLQNWIDLIV--IIPLY 351
>SB_8437| Best HMM Match : zf-C2H2 (HMM E-Value=0.0095)
Length = 214
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 226 MRWTENGSHL*LTTQTTRAFGHQNRLITQLTKAHGSIPKS 345
+++ E G H + ++ + F H+N+L + K H + KS
Sbjct: 161 LKYHEKGCHPCVCNESNKTFDHENKLKRHINKKHAASFKS 200
>SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 27 EKVESGDL*ADWD-FLPPKKIKDPEAKKPEDW 119
EKV +G++ ++D LPP++ K PE+ PE +
Sbjct: 48 EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79
>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
Length = 454
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -1
Query: 248 LPFSVHLIIPVFRFGGIWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFL 102
LP+ + L + R G + + R++ +LR+ ++SG+ + ++ FL
Sbjct: 233 LPYYIVLAVEKSRTGSLSVMRAARMLRVLRIFKLSRYSSGMRVLLYTFL 281
>SB_27655| Best HMM Match : 7tm_1 (HMM E-Value=2.90069e-43)
Length = 337
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = -1
Query: 281 ALVVWVVNHRWLPFSVHLIIPVFRFGGIWIWNVFRLVPILRLLVFG 144
ALV V W+PF + +I VFR ++W++ R++ ++++L +G
Sbjct: 214 ALVTGVFIVCWVPFFMITVIYVFRPFSWFVWDL-RVLILIKVLHYG 258
>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
Length = 524
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 22 TMRKLNLATYRQTGT-SFRLRKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQ 192
T R ++ R G SF+ T+ + + +PLFQTP ++L+ T TFQ
Sbjct: 149 TARLMDTGMLRTPGNASFQTPGVNTMYQQQIQRTPETPLFQTPPKQTLQAHTGRVTFQ 206
>SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 539
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 237 RPSHHPSLQVWWHLDLECVQACPNPQASCLRGL 139
+P HHP L W H L CP+ C +GL
Sbjct: 30 QPCHHPCLWKWVHAHLTPRSTCPH----CRKGL 58
>SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 285 WAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVK 428
W K P YK + + +P YTP Y + + DL+Q K
Sbjct: 478 WVVKVCGEPPYKSCSIASKQPSPHYTPQGYQYLSKLVATLVRDLFQRK 525
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,915,715
Number of Sequences: 59808
Number of extensions: 361415
Number of successful extensions: 1241
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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