BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0160 (656 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 206 1e-53 SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 73 2e-13 SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30) 33 0.20 SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 31 0.62 SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23) 30 1.4 SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2) 30 1.9 SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08) 29 2.5 SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36) 29 4.4 SB_8437| Best HMM Match : zf-C2H2 (HMM E-Value=0.0095) 29 4.4 SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8 SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36) 28 5.8 SB_27655| Best HMM Match : 7tm_1 (HMM E-Value=2.90069e-43) 28 5.8 SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 28 7.7 SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 28 7.7 SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 >SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1137 Score = 206 bits (503), Expect = 1e-53 Identities = 100/177 (56%), Positives = 110/177 (62%), Gaps = 1/177 (0%) Frame = +3 Query: 3 TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182 TYEV IDNEKVESG+L DWDFLPPK IKDPEAKKPEDW Sbjct: 864 TYEVKIDNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQ 923 Query: 183 HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYT 362 +IPDPDA K IDNP+YKG W PKQIDNP YKG WVHPEIDNPEY Sbjct: 924 NIPDPDAKKPEDWDDEIDGEWEPPMIDNPEYKGEWKPKQIDNPNYKGEWVHPEIDNPEYK 983 Query: 363 PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKKM 530 D LY +I A+G DLWQVKSGTIFD+ L+TD A++ E K +EGEKKM Sbjct: 984 ADDKLYMYKDIGAIGFDLWQVKSGTIFDNVLVTDSVEHAEQFAKETFDKTKEGEKKM 1040 >SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) Length = 1086 Score = 73.3 bits (172), Expect = 2e-13 Identities = 47/149 (31%), Positives = 62/149 (41%), Gaps = 8/149 (5%) Frame = +3 Query: 57 DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX----HIPDPDATKXXXXX 224 DWD +KI DP+A+KP+DW ++PDP+ K Sbjct: 142 DWD--EREKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGWLDDEPEYVPDPNGIKPEDWD 199 Query: 225 XXXXXXXXXXXIDNPDYK----GVWAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDE 392 I NP + G W P DNP YKG W P IDNP Y Sbjct: 200 DEEDGEWEAPQIANPKCEKVGCGEWKPPMADNPEYKGKWSAPLIDNPNYK---------- 249 Query: 393 ICAVGLDLWQVKSGTIFDDFLITDDPAAA 479 VGL+LW + S +FD+ ++T+D A A Sbjct: 250 -VGVGLELWSMTSDILFDNVIVTNDKAVA 277 >SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30) Length = 227 Score = 33.1 bits (72), Expect = 0.20 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = -1 Query: 227 IIPVFRFGGIWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFLG 99 ++ +F GGIW++ R + IL+L++F + L++ V +FLG Sbjct: 167 MVVIFCMGGIWVYPFMRKLNILQLVLF-FTGAYLLVAVVYFLG 208 >SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) Length = 649 Score = 31.5 bits (68), Expect = 0.62 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Frame = +1 Query: 100 PRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQTTR 279 P K T+P T T+ T + P K T ++ L+TQ T Sbjct: 379 PTKAKPPTTTPSKATAPISDPMTTTTPTTTKATTPTTTKATASTQTAAEANTFLSTQKTD 438 Query: 280 AFGHQNRLIT-----QLTKAHGSIPKSTTQSTLLIQTCTSATKSALSVS 411 A Q+ T Q TKA ++ STT++T T T+ + LS S Sbjct: 439 ATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTS 487 >SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23) Length = 689 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +3 Query: 285 WAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVK 428 W KQ+ A++ W +NP + D+NLY+ + + G+ WQV+ Sbjct: 640 WLDKQMSFIAFQEGWAL-YAENPILSHDTNLYEDNVLQRYGMLKWQVR 686 >SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2) Length = 371 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = +1 Query: 190 QIQMPPNLKTGMMRWTENGSHL*LTTQTTRAFGHQNRL 303 +I MP L++G +W +NGS + T++A+G+ N L Sbjct: 289 RIAMPSKLQSGS-QWQQNGSSNQEASTTSQAYGYTNEL 325 >SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08) Length = 317 Score = 29.5 bits (63), Expect = 2.5 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +1 Query: 226 MRWTENGSHL*LTTQTTRAFGHQNRLITQLTKAH-GSIPKSTTQSTLLIQTCTSATKSAL 402 +++ E G H + + F H+N+L + K H S+ TL + + T S + Sbjct: 243 LKYHEKGCHPCVCNECNETFDHENKLKRHINKKHAASLKCGDCGKTLQRKETSLGTASPI 302 Query: 403 SVSIC 417 S +C Sbjct: 303 SSPLC 307 >SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36) Length = 407 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = -1 Query: 365 RSVLWVVDFGMDPWAFVSWVINLFWCPNALVVWVVNHRWLPFSVHLIIPVF 213 R VL ++D W + +++ L +CP+ L + W+ V IIP++ Sbjct: 303 RYVLMIIDSVCTGWFTLEFLLRLVFCPSKLKFILTLQNWIDLIV--IIPLY 351 >SB_8437| Best HMM Match : zf-C2H2 (HMM E-Value=0.0095) Length = 214 Score = 28.7 bits (61), Expect = 4.4 Identities = 11/40 (27%), Positives = 22/40 (55%) Frame = +1 Query: 226 MRWTENGSHL*LTTQTTRAFGHQNRLITQLTKAHGSIPKS 345 +++ E G H + ++ + F H+N+L + K H + KS Sbjct: 161 LKYHEKGCHPCVCNESNKTFDHENKLKRHINKKHAASFKS 200 >SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 165 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +3 Query: 27 EKVESGDL*ADWD-FLPPKKIKDPEAKKPEDW 119 EKV +G++ ++D LPP++ K PE+ PE + Sbjct: 48 EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79 >SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36) Length = 454 Score = 28.3 bits (60), Expect = 5.8 Identities = 12/49 (24%), Positives = 27/49 (55%) Frame = -1 Query: 248 LPFSVHLIIPVFRFGGIWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFL 102 LP+ + L + R G + + R++ +LR+ ++SG+ + ++ FL Sbjct: 233 LPYYIVLAVEKSRTGSLSVMRAARMLRVLRIFKLSRYSSGMRVLLYTFL 281 >SB_27655| Best HMM Match : 7tm_1 (HMM E-Value=2.90069e-43) Length = 337 Score = 28.3 bits (60), Expect = 5.8 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = -1 Query: 281 ALVVWVVNHRWLPFSVHLIIPVFRFGGIWIWNVFRLVPILRLLVFG 144 ALV V W+PF + +I VFR ++W++ R++ ++++L +G Sbjct: 214 ALVTGVFIVCWVPFFMITVIYVFRPFSWFVWDL-RVLILIKVLHYG 258 >SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) Length = 524 Score = 27.9 bits (59), Expect = 7.7 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +1 Query: 22 TMRKLNLATYRQTGT-SFRLRKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQ 192 T R ++ R G SF+ T+ + + +PLFQTP ++L+ T TFQ Sbjct: 149 TARLMDTGMLRTPGNASFQTPGVNTMYQQQIQRTPETPLFQTPPKQTLQAHTGRVTFQ 206 >SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) Length = 539 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -3 Query: 237 RPSHHPSLQVWWHLDLECVQACPNPQASCLRGL 139 +P HHP L W H L CP+ C +GL Sbjct: 30 QPCHHPCLWKWVHAHLTPRSTCPH----CRKGL 58 >SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 605 Score = 27.9 bits (59), Expect = 7.7 Identities = 14/48 (29%), Positives = 20/48 (41%) Frame = +3 Query: 285 WAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVK 428 W K P YK + + +P YTP Y + + DL+Q K Sbjct: 478 WVVKVCGEPPYKSCSIASKQPSPHYTPQGYQYLSKLVATLVRDLFQRK 525 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,915,715 Number of Sequences: 59808 Number of extensions: 361415 Number of successful extensions: 1241 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1063 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1221 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1681430875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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