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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0160
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)             206   1e-53
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                73   2e-13
SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)          33   0.20 
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               31   0.62 
SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)                   30   1.4  
SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2)                 30   1.9  
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)               29   2.5  
SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36)               29   4.4  
SB_8437| Best HMM Match : zf-C2H2 (HMM E-Value=0.0095)                 29   4.4  
SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)             28   5.8  
SB_27655| Best HMM Match : 7tm_1 (HMM E-Value=2.90069e-43)             28   5.8  
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)                   28   7.7  
SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)                 28   7.7  
SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score =  206 bits (503), Expect = 1e-53
 Identities = 100/177 (56%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
 Frame = +3

Query: 3    TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
            TYEV IDNEKVESG+L  DWDFLPPK IKDPEAKKPEDW                     
Sbjct: 864  TYEVKIDNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDWDKPQ 923

Query: 183  HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYT 362
            +IPDPDA K                IDNP+YKG W PKQIDNP YKG WVHPEIDNPEY 
Sbjct: 924  NIPDPDAKKPEDWDDEIDGEWEPPMIDNPEYKGEWKPKQIDNPNYKGEWVHPEIDNPEYK 983

Query: 363  PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKKM 530
             D  LY   +I A+G DLWQVKSGTIFD+ L+TD    A++   E   K +EGEKKM
Sbjct: 984  ADDKLYMYKDIGAIGFDLWQVKSGTIFDNVLVTDSVEHAEQFAKETFDKTKEGEKKM 1040


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 47/149 (31%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
 Frame = +3

Query: 57  DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX----HIPDPDATKXXXXX 224
           DWD    +KI DP+A+KP+DW                         ++PDP+  K     
Sbjct: 142 DWD--EREKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGWLDDEPEYVPDPNGIKPEDWD 199

Query: 225 XXXXXXXXXXXIDNPDYK----GVWAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDE 392
                      I NP  +    G W P   DNP YKG W  P IDNP Y           
Sbjct: 200 DEEDGEWEAPQIANPKCEKVGCGEWKPPMADNPEYKGKWSAPLIDNPNYK---------- 249

Query: 393 ICAVGLDLWQVKSGTIFDDFLITDDPAAA 479
              VGL+LW + S  +FD+ ++T+D A A
Sbjct: 250 -VGVGLELWSMTSDILFDNVIVTNDKAVA 277


>SB_35037| Best HMM Match : Far-17a_AIG1 (HMM E-Value=4.6e-30)
          Length = 227

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = -1

Query: 227 IIPVFRFGGIWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFLG 99
           ++ +F  GGIW++   R + IL+L++F    + L++ V +FLG
Sbjct: 167 MVVIFCMGGIWVYPFMRKLNILQLVLF-FTGAYLLVAVVYFLG 208


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
 Frame = +1

Query: 100 PRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQTTR 279
           P   K   T+P   T         T+  T +   P   K      T   ++  L+TQ T 
Sbjct: 379 PTKAKPPTTTPSKATAPISDPMTTTTPTTTKATTPTTTKATASTQTAAEANTFLSTQKTD 438

Query: 280 AFGHQNRLIT-----QLTKAHGSIPKSTTQSTLLIQTCTSATKSALSVS 411
           A   Q+   T     Q TKA  ++  STT++T    T T+   + LS S
Sbjct: 439 ATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTS 487


>SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)
          Length = 689

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 285 WAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVK 428
           W  KQ+   A++  W     +NP  + D+NLY+ + +   G+  WQV+
Sbjct: 640 WLDKQMSFIAFQEGWAL-YAENPILSHDTNLYEDNVLQRYGMLKWQVR 686


>SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2)
          Length = 371

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 190 QIQMPPNLKTGMMRWTENGSHL*LTTQTTRAFGHQNRL 303
           +I MP  L++G  +W +NGS     + T++A+G+ N L
Sbjct: 289 RIAMPSKLQSGS-QWQQNGSSNQEASTTSQAYGYTNEL 325


>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
          Length = 317

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 226 MRWTENGSHL*LTTQTTRAFGHQNRLITQLTKAH-GSIPKSTTQSTLLIQTCTSATKSAL 402
           +++ E G H  +  +    F H+N+L   + K H  S+       TL  +  +  T S +
Sbjct: 243 LKYHEKGCHPCVCNECNETFDHENKLKRHINKKHAASLKCGDCGKTLQRKETSLGTASPI 302

Query: 403 SVSIC 417
           S  +C
Sbjct: 303 SSPLC 307


>SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36)
          Length = 407

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 365 RSVLWVVDFGMDPWAFVSWVINLFWCPNALVVWVVNHRWLPFSVHLIIPVF 213
           R VL ++D     W  + +++ L +CP+ L   +    W+   V  IIP++
Sbjct: 303 RYVLMIIDSVCTGWFTLEFLLRLVFCPSKLKFILTLQNWIDLIV--IIPLY 351


>SB_8437| Best HMM Match : zf-C2H2 (HMM E-Value=0.0095)
          Length = 214

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 226 MRWTENGSHL*LTTQTTRAFGHQNRLITQLTKAHGSIPKS 345
           +++ E G H  +  ++ + F H+N+L   + K H +  KS
Sbjct: 161 LKYHEKGCHPCVCNESNKTFDHENKLKRHINKKHAASFKS 200


>SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 27  EKVESGDL*ADWD-FLPPKKIKDPEAKKPEDW 119
           EKV +G++  ++D  LPP++ K PE+  PE +
Sbjct: 48  EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79


>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
          Length = 454

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -1

Query: 248 LPFSVHLIIPVFRFGGIWIWNVFRLVPILRLLVFGVWNSGLVIPVFWFL 102
           LP+ + L +   R G + +    R++ +LR+     ++SG+ + ++ FL
Sbjct: 233 LPYYIVLAVEKSRTGSLSVMRAARMLRVLRIFKLSRYSSGMRVLLYTFL 281


>SB_27655| Best HMM Match : 7tm_1 (HMM E-Value=2.90069e-43)
          Length = 337

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -1

Query: 281 ALVVWVVNHRWLPFSVHLIIPVFRFGGIWIWNVFRLVPILRLLVFG 144
           ALV  V    W+PF +  +I VFR    ++W++ R++ ++++L +G
Sbjct: 214 ALVTGVFIVCWVPFFMITVIYVFRPFSWFVWDL-RVLILIKVLHYG 258


>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
          Length = 524

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 22  TMRKLNLATYRQTGT-SFRLRKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTFQ 192
           T R ++    R  G  SF+     T+  +  +    +PLFQTP  ++L+  T   TFQ
Sbjct: 149 TARLMDTGMLRTPGNASFQTPGVNTMYQQQIQRTPETPLFQTPPKQTLQAHTGRVTFQ 206


>SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
          Length = 539

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 237 RPSHHPSLQVWWHLDLECVQACPNPQASCLRGL 139
           +P HHP L  W H  L     CP+    C +GL
Sbjct: 30  QPCHHPCLWKWVHAHLTPRSTCPH----CRKGL 58


>SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 285 WAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVK 428
           W  K    P YK   +  +  +P YTP    Y    +  +  DL+Q K
Sbjct: 478 WVVKVCGEPPYKSCSIASKQPSPHYTPQGYQYLSKLVATLVRDLFQRK 525


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,915,715
Number of Sequences: 59808
Number of extensions: 361415
Number of successful extensions: 1241
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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