Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0160
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 187 7e-48
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 187 7e-48
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 71 1e-12
AL132862-20|CAD59165.1| 323|Caenorhabditis elegans Hypothetical... 30 1.7
AL132862-19|CAB70231.2| 640|Caenorhabditis elegans Hypothetical... 30 1.7
AF125459-4|AAD12839.1| 287|Caenorhabditis elegans Hypothetical ... 30 1.7
AF125459-3|AAX88817.1| 277|Caenorhabditis elegans Hypothetical ... 30 1.7
AF125459-2|AAX88818.1| 414|Caenorhabditis elegans Hypothetical ... 30 1.7
Z30423-3|CAA83005.2| 456|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 29 3.8
Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical p... 28 5.1
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 27 8.9
U40028-10|AAA81121.3| 363|Caenorhabditis elegans Serpentine rec... 27 8.9
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 187 bits (455), Expect = 7e-48
Identities = 89/176 (50%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
TYEV ID E ++G L DWD LP KKIKDP+AKKPEDW
Sbjct: 176 TYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPE 235
Query: 183 HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYT 362
HIPDPDA K IDNP+YKG W PKQI NPAYKG W+HPEI+NPEYT
Sbjct: 236 HIPDPDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYT 295
Query: 363 PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQEGEKK 527
PD LY + A+G DLWQVKSGTIFD+ +ITD A+ E K + EK+
Sbjct: 296 PDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTVEKE 351
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 187 bits (455), Expect = 7e-48
Identities = 89/176 (50%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Frame = +3
Query: 3 TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
TYEV ID E ++G L DWD LP KKIKDP+AKKPEDW
Sbjct: 176 TYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPE 235
Query: 183 HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYT 362
HIPDPDA K IDNP+YKG W PKQI NPAYKG W+HPEI+NPEYT
Sbjct: 236 HIPDPDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENPEYT 295
Query: 363 PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK-ERGEVIKKRQEGEKK 527
PD LY + A+G DLWQVKSGTIFD+ +ITD A+ E K + EK+
Sbjct: 296 PDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEEAEAHAAETFDKLKTVEKE 351
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 70.5 bits (165), Expect = 1e-12
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Frame = +3
Query: 57 DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPDPDATKXXXXXXXXX 236
DW+ + I DPEAKKP+DW + D A K
Sbjct: 314 DWNEEENELIADPEAKKPQDWDEDMDGSWEAP-----------LIDNPACKGLSGCGTWK 362
Query: 237 XXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDL 416
I NP YKG W +I NPA+KG W IDNP Y I AVG+++
Sbjct: 363 APT----IKNPKYKGKWIRPKISNPAFKGKWTARLIDNPNYFEPKPFAGLAPITAVGIEM 418
Query: 417 WQVKSGTIFDDFLIT---DDPAAAKERGEVIKKRQE 515
W + +FD+ LIT +D + ++ +K+++E
Sbjct: 419 WTMSENILFDNILITSSEEDSSDVAKQTFYVKQKEE 454
>AL132862-20|CAD59165.1| 323|Caenorhabditis elegans Hypothetical
protein Y73F8A.25b protein.
Length = 323
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 262 TTQTTRAFGHQNRLITQLTKAHGSIPKSTTQSTLLIQTCTSAT 390
TT TT++ + T T +H +TT +T +++TC AT
Sbjct: 260 TTTTTKSSSPNSLSTTTTTTSHNPGASATTTTTTVVKTCGPAT 302
>AL132862-19|CAB70231.2| 640|Caenorhabditis elegans Hypothetical
protein Y73F8A.25a protein.
Length = 640
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 262 TTQTTRAFGHQNRLITQLTKAHGSIPKSTTQSTLLIQTCTSAT 390
TT TT++ + T T +H +TT +T +++TC AT
Sbjct: 577 TTTTTKSSSPNSLSTTTTTTSHNPGASATTTTTTVVKTCGPAT 619
>AF125459-4|AAD12839.1| 287|Caenorhabditis elegans Hypothetical
protein Y25C1A.7b protein.
Length = 287
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 362 SVLWVVDFGMDPWAFVSWVINLFWCPNALVVWVV----NHRWLPFSVHLIIPVFRF 207
SVLW+VD G WA + + L A +W N++ + F + + V F
Sbjct: 207 SVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMIAFGTVISVVVLHF 262
>AF125459-3|AAX88817.1| 277|Caenorhabditis elegans Hypothetical
protein Y25C1A.7a protein.
Length = 277
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 362 SVLWVVDFGMDPWAFVSWVINLFWCPNALVVWVV----NHRWLPFSVHLIIPVFRF 207
SVLW+VD G WA + + L A +W N++ + F + + V F
Sbjct: 197 SVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMIAFGTVISVVVLHF 252
>AF125459-2|AAX88818.1| 414|Caenorhabditis elegans Hypothetical
protein Y25C1A.7c protein.
Length = 414
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 362 SVLWVVDFGMDPWAFVSWVINLFWCPNALVVWVV----NHRWLPFSVHLIIPVFRF 207
SVLW+VD G WA + + L A +W N++ + F + + V F
Sbjct: 197 SVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMIAFGTVISVVVLHF 252
>Z30423-3|CAA83005.2| 456|Caenorhabditis elegans Hypothetical
protein T20G5.4 protein.
Length = 456
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -1
Query: 329 PWAFVSWVINLFWCPNAL-VVWVVNHRWLPFSVHLIIPVFRFGGIWIWNVFRLVPILRLL 153
PW F++ + W + +W+ WL L+ ++RF I + ++ +RL+
Sbjct: 14 PWTFLALIFR--WRGSVWSAIWIQYSVWLGL-YFLVSAIYRF----ILSAYQQQIFVRLV 66
Query: 152 VFGVWNSGLVIPVFWFLGFRVLDFLRR 72
+ V + +P+ W LGF + LRR
Sbjct: 67 DY-VNSRMSYVPLDWMLGFFIAGVLRR 92
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 336 PEIDNPEYTPDSNLYKRDEICAV---GLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKK 506
P++ +P+Y N+ D++ V L V + D+ + +E GE KK
Sbjct: 271 PDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEKEQETGEAEKK 330
Query: 507 RQEGEKK 527
+ E +KK
Sbjct: 331 KDEKDKK 337
>Z78198-12|CAJ85750.1| 205|Caenorhabditis elegans Hypothetical
protein F55C5.11 protein.
Length = 205
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 13 SSLTMRKLNLATYRQTGTSFRLRKSRTLKPRNQKTGMTSPLFQTPKTRSLRIGTSLNTF 189
S++ +R+++ T G F R+SR N + P T L + TSL+TF
Sbjct: 127 SAVHLREMHTCTVTGCGKQFSSRRSRNRHSSNNNPKLHMPESLTLTGSGLSMKTSLDTF 185
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 432 GTIFDDFLITDDPAAAKERGEVIKKRQEGEKK 527
G D+ D+ A KER E++KKR+E K+
Sbjct: 654 GADSDESNSEDEEAEEKERQEILKKREEDLKR 685
>U40028-10|AAA81121.3| 363|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 40 protein.
Length = 363
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 272 VWVVNHRWLPFSVHLIIPVFR-FGGIWIWNV 183
+W+ + WL + L+I F FG IW WN+
Sbjct: 193 LWLSVYIWLLTGILLLIVNFGLFGYIWYWNI 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,278,570
Number of Sequences: 27780
Number of extensions: 261784
Number of successful extensions: 922
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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