Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0160
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 287 PNALV-VWVVNHRWLPFSVHLIIPVF 213
           PN +V  W+ + R+LP S+ +++  F
Sbjct: 796 PNGIVKTWIAHDRYLPNSLRILLKRF 821


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 148 KTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQTTRAF 285
           K R+    T+LN   +  PPNL+    R  E  S +        AF
Sbjct: 295 KERNGPTQTTLNATTLFCPPNLRLTSERGYEQESKVQFVVDAVYAF 340


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 148 KTRSLRIGTSLNTFQIQMPPNLKTGMMRWTENGSHL*LTTQTTRAF 285
           K R+    T+LN   +  PPNL+    R  E  S +        AF
Sbjct: 385 KERNGPTQTTLNATTLFCPPNLRLTSERGYEQESKVQFVVDAVYAF 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,086
Number of Sequences: 438
Number of extensions: 3011
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)