Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0160
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr...   155   2e-38
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q...   154   6e-38
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi...   134   4e-32
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi...   134   5e-32
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi...    75   6e-14
At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin...    71   7e-13
At2g17150.1 68415.m01980 RWP-RK domain-containing protein simila...    26   0.30 
At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identi...    28   4.8  
At2g46710.1 68415.m05828 rac GTPase activating protein, putative...    28   6.3  

>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
           calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
          Length = 425

 Score =  155 bits (376), Expect = 2e-38
 Identities = 78/176 (44%), Positives = 98/176 (55%), Gaps = 2/176 (1%)
 Frame = +3

Query: 3   TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
           TY +LIDN + ++G L +DWD LP KKIKDP AKKPEDW                     
Sbjct: 184 TYSILIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAGYDDIP 243

Query: 183 -HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY 359
             IPD DA K                I NP+Y G W PK+I NPAYKG W  P IDNPE+
Sbjct: 244 KEIPDTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIKNPAYKGKWKAPMIDNPEF 303

Query: 360 TPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKERG-EVIKKRQEGEK 524
             D  LY   ++  VG++LWQVKSG++FD+ L++DDP  AK+   E   K ++ EK
Sbjct: 304 KDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKHKDAEK 359


>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
           SP|Q38858 Calreticulin 2 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score =  154 bits (373), Expect = 6e-38
 Identities = 79/176 (44%), Positives = 97/176 (55%), Gaps = 2/176 (1%)
 Frame = +3

Query: 3   TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
           TY +LIDN + ++G L +DWD LPPKKIKDP AKKPEDW                     
Sbjct: 184 TYSILIDNVEKQTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQEYISDPEDKKPDGYDDIP 243

Query: 183 -HIPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY 359
             IPD D+ K                I NP+Y G W PKQI NP YKG W  P IDNP++
Sbjct: 244 KEIPDTDSKKPEDWDDEEDGEWTAPTIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDF 303

Query: 360 TPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 524
             D  LY   ++  VGL+LWQVKSG++FD+ LI DDP  AK+   E   K ++ EK
Sbjct: 304 KDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGKLKDAEK 359


>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score =  134 bits (325), Expect = 4e-32
 Identities = 70/178 (39%), Positives = 93/178 (52%), Gaps = 2/178 (1%)
 Frame = +3

Query: 3   TYEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXX 182
           +Y VL+DN++ E G +  DWD LPP+KIK   AKKPEDW                     
Sbjct: 190 SYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIP 249

Query: 183 H-IPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEY 359
             IPD  A +                I N  YKG W  K+I NP YKG W +P IDNPE+
Sbjct: 250 REIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPEF 309

Query: 360 TPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKKM 530
             D +LY    I   G+++WQVK+G+IFD+ LI DDPA A+    +   + +E EK++
Sbjct: 310 EDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQHRESEKEL 367


>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 370

 Score =  134 bits (324), Expect = 5e-32
 Identities = 70/177 (39%), Positives = 92/177 (51%), Gaps = 2/177 (1%)
 Frame = +3

Query: 6   YEVLIDNEKVESGDL*ADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXH 185
           Y VL+DN++ E G +  DWD LPP+KIK   AKKPEDW                      
Sbjct: 137 YSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIPR 196

Query: 186 -IPDPDATKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYT 362
            IPD  A +                I N  YKG W  K+I NP YKG W +P IDNPE+ 
Sbjct: 197 EIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPEFE 256

Query: 363 PDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEKKM 530
            D +LY    I   G+++WQVK+G+IFD+ LI DDPA A+    +   + +E EK++
Sbjct: 257 DDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQHRESEKEL 313


>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
           homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
           similarity to calnexin homolog 1, Arabidopsis thaliana,
           EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
           calreticulin family
          Length = 532

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 5/162 (3%)
 Frame = +3

Query: 57  DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIPD----PDATKXXXXX 224
           DWD   P +I+D EA+KPE W                             P  +      
Sbjct: 252 DWDEDAPMEIEDEEAEKPEGWLDDEPVEVEDPEASKPEDWDDEEDGEWEAPKVSNTKCEA 311

Query: 225 XXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAV 404
                        NP YKG W+   IDNPAYKG W   +I NP+Y  +      + I A+
Sbjct: 312 APGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYF-ELERPNLEPIAAI 370

Query: 405 GLDLWQVKSGTIFDDFLIT-DDPAAAKERGEVIKKRQEGEKK 527
           G+++W ++ G +FD+ LI+ D+  A   R    K + + EK+
Sbjct: 371 GIEIWTMQDGILFDNILISKDEKVAETYRQSTWKPKFDVEKE 412



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
 Frame = +3

Query: 12  VLIDNEKVESGDL*ADWDFLPP----KKIKDPEAKKPEDW 119
           +L+D E+ + G+L +  DF PP    K I DPE KKPEDW
Sbjct: 197 ILVDGEEKKKGNLLSAEDFEPPLIPSKTIPDPEDKKPEDW 236


>At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin
           homolog 1, Arabidopsis thaliana, EMBL:AT08315
           [SP|P29402]
          Length = 530

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 30/187 (16%)
 Frame = +3

Query: 57  DWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXHIP----DPDATKXXXXX 224
           DWD     KI DP A KPEDW                       P    DP+ATK     
Sbjct: 233 DWD--ERAKIPDPNAVKPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEVDDPEATKPEDWD 290

Query: 225 XXXXXXXXXXXIDNPDYK-----GVWAPKQIDNPAYKGPWVHPEIDNPEY--------TP 365
                      IDNP  +     G W      NPAYKG W  P IDNP Y         P
Sbjct: 291 DEEDGMWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIP 350

Query: 366 DSNLYKRDE-----ICAVGLDLWQVKSGTIFDDFLITDDPAAA--------KERGEVIKK 506
           + + ++ D      I A+G+++W ++ G +FD+ LI  D   A        K + +V K+
Sbjct: 351 NPDYFELDRPDYEPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDVEKE 410

Query: 507 RQEGEKK 527
           +Q+ E++
Sbjct: 411 KQKAEEE 417


>At2g17150.1 68415.m01980 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 909

 Score = 26.2 bits (55), Expect(2) = 0.30
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 282 VWAPKQIDNPAYKGPWVHPEIDNPEYT 362
           +W P Q +  ++   W  P + N EY+
Sbjct: 148 IWVPIQQEGKSFLTTWAQPHLFNQEYS 174



 Score = 24.6 bits (51), Expect(2) = 0.30
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 351 PEYTPDSNLYKRDE 392
           PE+TPD   ++RDE
Sbjct: 210 PEWTPDVRFFRRDE 223


>At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identical
           to GI:1742952 (gb|AAC05742.1)
          Length = 775

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 209 FGGIWIWNVFRLVPILRLLVFGVWN-SGLVIPV 114
           FG + +W  F L  IL L+ FG+   SGL +P+
Sbjct: 451 FGMVSLWIFFGLYCILGLITFGIATPSGLFLPI 483


>At2g46710.1 68415.m05828 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 2 [Lotus
           japonicus] GI:3695061; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 455

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 261 DNPDYKGVWAPKQIDNPAYKGPWVHPEIDNPEYTPDSN 374
           +N D K  W  KQ  +P+ +    H EI +PE  P++N
Sbjct: 331 ENADAKARWLKKQTSDPSEEWESQHSEILSPE-KPNNN 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,417
Number of Sequences: 28952
Number of extensions: 254920
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)