Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0159
         (707 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000050FD82 Cluster: COG0747: ABC-type dipeptide tran...    36   0.74 
UniRef50_A7I8F9 Cluster: Multi-sensor signal transduction histid...    33   5.2  

>UniRef50_UPI000050FD82 Cluster: COG0747: ABC-type dipeptide
           transport system, periplasmic component; n=1;
           Brevibacterium linens BL2|Rep: COG0747: ABC-type
           dipeptide transport system, periplasmic component -
           Brevibacterium linens BL2
          Length = 515

 Score = 36.3 bits (80), Expect = 0.74
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 494 NYIPALLVGTISESD-NNNEYDMHSFNAILDEIPGTSKAKDEESREGRLSNIIF 652
           +++P ++  ++ ES  N   +D  +FN + DE+    +AKD   RE  L  +++
Sbjct: 416 DFLPQVIACSLEESPFNETHWDDPTFNKVFDEVRAIPEAKDRRDREHELQKMLY 469


>UniRef50_A7I8F9 Cluster: Multi-sensor signal transduction histidine
           kinase; n=1; Candidatus Methanoregula boonei 6A8|Rep:
           Multi-sensor signal transduction histidine kinase -
           Methanoregula boonei (strain 6A8)
          Length = 783

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 174 FLSKIYFVVRINIKICYLSSVDYLK*IRSNIFKSQLKYLTLFP*HYYAILLIVGEMG 344
           F+S +YFV    I  C +  +   K ++  +  S+++Y  LF     AIL++ G+ G
Sbjct: 410 FISNVYFVGEKRIIQCNIRDITDRKVVQDEMLASEIRYRRLFETAQDAILILDGDTG 466


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,224,870
Number of Sequences: 1657284
Number of extensions: 13404723
Number of successful extensions: 30615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30615
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)