Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0159
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   3.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.2  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   9.8  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 130 PKLIPNWFVRHII 92
           P LIPN+++ H I
Sbjct: 297 PDLIPNYYIAHFI 309


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 43  YLKWIAGVSWVTVSNFV*YV*QTNWESIS 129
           Y KW++ +SW    N    + Q  WE+++
Sbjct: 584 YFKWLSFLSWFRYGNGALMINQ--WENVT 610


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 43  YLKWIAGVSWVTVSNFV*YV*QTNWESIS 129
           Y KW++ +SW    N    + Q  WE+++
Sbjct: 584 YFKWLSFLSWFRYGNGALMINQ--WENVT 610


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 500 YNFTNSRAWHAIRRALIVLRGAQVSK 423
           YNF   + W      L +L+G ++ K
Sbjct: 72  YNFWKKKYWSEFLANLKLLKGRKIRK 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,191
Number of Sequences: 336
Number of extensions: 3482
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)