Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0159
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    31   0.21 
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   4.6  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.0  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 527 SESDNNNEYDMHSFNAILDEIPGTSKAKDEESREGRLSNIIFV 655
           S  +N    D H+ +  LD+ P     KDEE    RL+++IF+
Sbjct: 798 SNHENTTSNDDHAMDEDLDDSPEEETLKDEEEIGIRLAHLIFL 840


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 684 TIRTRKCFEQTKMMLDNLPSLD 619
           T+R R   E T  +L NLPSLD
Sbjct: 367 TVRFRDMIETTFSVLQNLPSLD 388


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 329  CGRNGSSLI*GVKRTVPI-DAWLRRSSVL---NGVSSIPGHLEELLTPSL 466
            CG+ GSSL  G K+ + I  A +R   +L      S++  H E+++  +L
Sbjct: 1252 CGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEAL 1301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,554
Number of Sequences: 5004
Number of extensions: 59308
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)