Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0159
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 74  SQLVTLYNMSNKPIGNQFRP 133
           + L+  YN+  +P+GN+  P
Sbjct: 29  NDLLDTYNVLERPVGNESEP 48


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 503 VYNFTNSRAW 474
           VY+F NSR+W
Sbjct: 210 VYDFRNSRSW 219


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 363 TP*IRDDPFRPQLARLHNNVTGIESNIL 280
           TP  RD   RP   RLH+ + G   N+L
Sbjct: 94  TPDSRDYFSRPFEKRLHSRLPGRNFNLL 121


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 87  LCIICLTNQLGINFGPNKSGSYVSYDDQ 170
           L +I  +N L + +GP      ++Y DQ
Sbjct: 640 LVVISSSNPLNVPYGPVIPEQSLTYQDQ 667


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,178
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)