Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0158
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    29   0.034
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.9  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   6.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.8  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   9.0  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 0.034
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 298 HQRLGSHISGVAALHTWTTGDTHAAFKLSLD-SPQTSSSTGDTHAAFKLSLDSPHASSST 474
           H + GS ++G     +      + +F LSL  SP  SS     H   +   DSP+ +S  
Sbjct: 15  HHQSGS-VAGHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHHHLQARPPQDSPYDASVA 73

Query: 475 GPCKLISA 498
             CKL S+
Sbjct: 74  AACKLYSS 81


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 122  HNPRILADKSTSLTVVPQQASIA 190
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429



 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 164 VVPQQASIAASTGPSQPTHRASWSYG 241
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 122  HNPRILADKSTSLTVVPQQASIA 190
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429



 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 164 VVPQQASIAASTGPSQPTHRASWSYG 241
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 228 PGPTAHNFTASSRRNSSSQPTTGSST 305
           P P     T S    +S QPT  S+T
Sbjct: 399 PEPQPTQTTESEPTQASEQPTESSTT 424


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 164 VVPQQASIAASTGPSQPTHRASWSYG 241
           V+P   + A+S G   P H +S+  G
Sbjct: 106 VLPGNYANASSVGSRNPIHTSSYMTG 131


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 487 ACKGQCCSKHAVSRG*A*MLRACRQCCSKS 398
           AC G+C S   VS      +     CC +S
Sbjct: 64  ACIGRCASYIQVSGSKIWQMERSCMCCQES 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,090
Number of Sequences: 336
Number of extensions: 2528
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)