Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0158
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 33 0.19
03_01_0168 + 1382531-1383931,1384028-1384150 31 0.58
11_03_0047 - 9311913-9312659 30 1.0
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 30 1.3
12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551 29 1.8
02_05_1332 + 35758657-35758728,35758959-35760689 29 2.4
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 29 3.1
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 29 3.1
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107 28 4.1
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429... 28 4.1
01_01_0481 + 3531859-3532145,3532254-3532749 28 4.1
09_02_0468 - 9608922-9610061 28 5.4
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 5.4
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 28 5.4
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 27 7.2
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 27 7.2
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 27 7.2
02_03_0345 + 17973509-17974131,17974207-17974537,17974624-179749... 27 7.2
02_03_0344 + 17967687-17968309,17968402-17968744,17970285-179704... 27 7.2
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 27 7.2
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 27 9.5
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 27 9.5
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 180 PASQPQQDHRSRLTALPGPTAHNFTASSRRNSSSQPTTGSST 305
PA QP Q + ++ + PT+ + ++S R + SS+P +ST
Sbjct: 143 PAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATST 184
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 255 ASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHAR 368
A +RRN SS P+ ++ G+ H+ G +A + W+ R
Sbjct: 65 AGNRRNDSSPPSDDAAPTGLGHIVFGIAASSELWKSRR 102
>11_03_0047 - 9311913-9312659
Length = 248
Score = 30.3 bits (65), Expect = 1.0
Identities = 27/85 (31%), Positives = 38/85 (44%)
Frame = +3
Query: 207 RSRLTALPGPTAHNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQS 386
R ++ P P T+SS +S S PTTGS G+ H + A+M A + Q+
Sbjct: 44 RELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDH--KSLRANM-----AAPVAEQA 96
Query: 387 RLTADFEQHWRHARSI*AQPRLTAC 461
R+ AD R + A P T C
Sbjct: 97 RVLADGMA--AVVRELLAMPMPTVC 119
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Frame = +1
Query: 169 PTASQHRSLNRTIAADSPRFLVLRHTTSLPHHAATVHRSPRPDHQRLGSHISGVAALHTW 348
P+ H+ L + D RH +S H SP P + G + G A + +
Sbjct: 386 PSRPSHQELPVSQRGDGQPSTTTRHFSS---PIGMEHVSPTPQY---GPLLRGKAFVPSA 439
Query: 349 TTGDTHAAFKLS-LDSPQTSSSTGDTHAAFKLSLDSPHASSSTGPCKLISAR 501
G HA + +D P SST + + F ++ + +S+ P ++ R
Sbjct: 440 GHGKLHAEVPIKGMDHPSFHSSTSSSTSQFPIATNQVTGNSAKSPHPIVQQR 491
>12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551
Length = 201
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -2
Query: 331 PRRRCVTPSVDDPVVGCDELLRRDEAVKLCAVGPGSAVSRLRWSC*GCDAGLLWDDCQ*R 152
P+ TP + +LLR + C GP A+SR SC G G W C
Sbjct: 125 PQETQPTPPSPATTMRLADLLRERQESFTCYDGPACAISRTGSSC-GAGNGEQWSHCCIP 183
Query: 151 AFI 143
+F+
Sbjct: 184 SFV 186
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 123 TIPAFSQIKARH*Q--SSHSKPASQPQQDHRSRLTALPGPTAHNFTASSRRNSSSQPTTG 296
T F+ H Q +S +KP S QQ+ + P +AHN + ++N +++ G
Sbjct: 99 TTKVFAPASVPHPQLKNSWTKPNSSAQQNAPPAIFDKPKDSAHNGKTAQKQNLTNR--AG 156
Query: 297 SSTLGVTHLRRGS 335
S+ G+ H ++GS
Sbjct: 157 HSS-GIIHDKKGS 168
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 174 SKPASQPQQDHRSRLTALPGPTAHNFTASSRRNSSSQPTTGSSTL 308
S SQPQQ H ++P PT +A ++S P S +
Sbjct: 393 SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDI 437
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/87 (22%), Positives = 33/87 (37%)
Frame = +3
Query: 162 QSSHSKPASQPQQDHRSRLTALPGPTAHNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSA 341
+ + P +Q R L GP N TA + S STL H
Sbjct: 356 EDTEETPVAQKLSSTPMRPETLHGPNPVNETAPKAQKSVKSSKFRDSTLSSKHRSSKRQE 415
Query: 342 HMDYWRHARSIQAQSRLTADFEQHWRH 422
+ +++ + + Q S++ D +H RH
Sbjct: 416 YAEFYGSSETPQVSSKVPKDRLRH-RH 441
>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
Length = 151
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +3
Query: 162 QSSHSKPASQPQQDHRSRLTALPGPTAHNFTASSRRNSSSQPTTGSSTLGVTHLRR 329
Q H Q QQ R H+ ASS ++SSS + SS+L V RR
Sbjct: 71 QQEHHPHHHQQQQQQYQRQQQQQQQEDHSDAASSVKDSSSSSSNKSSSLQVVKKRR 126
>02_03_0084 -
15041261-15041437,15041625-15041765,15042857-15042946,
15043111-15043201,15043953-15044155,15045361-15045438,
15045535-15045651,15046111-15046161,15046405-15046500,
15046726-15046742,15046938-15047064,15050585-15050681,
15051565-15051638,15051910-15051993,15052099-15052290,
15054191-15054319,15055607-15055639,15055747-15055843,
15055940-15055990,15057494-15057564,15058305-15058455,
15058625-15058703,15059265-15059346,15060335-15060335,
15060565-15060620,15060969-15061018,15061511-15061580
Length = 834
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 237 TAHNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAH-MDYWRHARSIQAQSRLTADFEQH 413
T H+ T RRN + T ++ +G+ G AH Y++ ++++ + + +F++H
Sbjct: 734 TPHDTTTPHRRNDPNAAATTTTAMGIGEHFEGVKAHNFGYFKKLKALR-ELAVDREFQKH 792
>01_01_0481 + 3531859-3532145,3532254-3532749
Length = 260
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/84 (29%), Positives = 35/84 (41%)
Frame = +3
Query: 99 SASRTSATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTAHNFTASSRRNSS 278
S+S T+A A + +S PAS H R T P P AH A++ +
Sbjct: 130 SSSATTAAGAAATGHRRGEADRSRPPPPASFNTFSHDDRTT--PAPAAHIAAAAAVEAPA 187
Query: 279 SQPTTGSSTLGVTHLRRGSSAHMD 350
+ TTG + +G L S H D
Sbjct: 188 AMTTTGGA-VGGGVLVDNSGGHRD 210
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 208 AADSPRFLVLRHTTSLPHHAATVHRSPRPDHQR 306
+ DSPR+ R S+P T+ RSPR +R
Sbjct: 77 SVDSPRWRGARRRPSVPDMELTLSRSPRAGEER 109
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 137 LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 232
LAD T P+ SI AST PSQ H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 188 AASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQ 334
A+STG +P +W+ G++ L F AA+ ++ + + WQ
Sbjct: 26 ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74
>11_06_0388 + 23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +1
Query: 1 APAQWKIFPFVVKTPKTGDLRRDL--NTQSSDSSSAHQEL-RLPQSPHSRR*KHVIDS-R 168
AP W+I+PF K ++ + + + +T+ + SS+ +E+ R P ++R + + S
Sbjct: 1081 APGGWRIWPFSFKRTRSVNTVQPVSESTEEASSSAPVKEVERENNKPRAKRMERKVRSLT 1140
Query: 169 PTASQHRSLN 198
PT+ + SL+
Sbjct: 1141 PTSEELASLD 1150
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 216 LTALPGPTAHNFTASSRRNSSSQPT 290
+ A+PGPT+ N NSSS P+
Sbjct: 510 IPAIPGPTSRNVPMEENSNSSSIPS 534
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 90 FIISASRTSATTIPAFSQIKARH*Q--SSHSKPASQPQQDHRSRLTALPGPTAHNFTASS 263
+I+ +P S+I AR + S+ A D SRL LP +SS
Sbjct: 616 YIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKITKK--SSS 673
Query: 264 RRNSSSQPTTGSSTLGVTHLRRGSS 338
+ ++ S P GSS L V+ GSS
Sbjct: 674 KGSAGSMPKQGSSDLIVSDNGGGSS 698
>02_03_0345 +
17973509-17974131,17974207-17974537,17974624-17974985,
17975314-17975572
Length = 524
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 330 GSSAHMDYWRHARSIQAQSRLTADFEQHW 416
G++++ YWRH R I L+A QH+
Sbjct: 123 GTASYGPYWRHIRRIAVTELLSAHRVQHF 151
>02_03_0344 +
17967687-17968309,17968402-17968744,17970285-17970410,
17970458-17970642,17970721-17970973
Length = 509
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 330 GSSAHMDYWRHARSIQAQSRLTADFEQHWR--HARSI*AQPR 449
G++++ YWRH R + L+A QH+ H R A R
Sbjct: 122 GTASYGPYWRHVRRVAVTEILSARRVQHFADVHVREARAMAR 163
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 297 SSTLGVTHLRRGSSA---HMDYWRHARSIQAQSRLTADFEQHWR 419
+S LG HL ++A H D A + A+ R+ AD ++H+R
Sbjct: 496 TSNLGAQHLADAAAADASHKDDATEAAAAAAKQRVLADVQRHFR 539
>07_01_1149 + 10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 242 CRRTRKRGESAAMVLLRLRCWLAVGRLSM 156
C + RKRG S+ ++L++R A GR+S+
Sbjct: 976 CNKWRKRGISSVPLILKVRVRPAPGRVSV 1004
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 328 VAALHTWTTGDTHAAFK-LSLDSPQTSSSTGDTHAAFKLSLDSPHASSSTGPCKL-ISAR 501
VAA+ WT G+ ++ K L +D S A FK + P++++ +G K +SA
Sbjct: 189 VAAMLRWTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAE-PNSNNKSGSTKWDLSAT 247
Query: 502 TTI 510
T+
Sbjct: 248 ITV 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,054,391
Number of Sequences: 37544
Number of extensions: 339829
Number of successful extensions: 1363
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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