Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0158
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.49 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   0.49 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   6.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +3

Query: 228 PGPTAHNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARS 371
           P P     +A S   SSS P  G++  G    R G   +    +  +S
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKS 558



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 125 NPRILADKSTSLTVVPQQASIAASTGPSQ 211
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 259 HHAATVHRSPRPDHQRLGSHISGVA 333
           HH   VHR  +P++  L S   G A
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAA 50


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 487 ACKGQCCSKHAVSRG*A*MLRACRQCCSKS 398
           AC+G+C S   VS      +     CC +S
Sbjct: 52  ACRGRCSSYLQVSGSKIWQMERSCMCCQES 81


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
 Frame = +3

Query: 162  QSSHSKPASQPQQDHRSRLTALPGPTAHNFTASSRRNSSSQPTTGSSTLGVTHLRRG-SS 338
            Q    +   QPQQ  +      P P         ++    Q   G+ +  V  L+RG +S
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNS 1566

Query: 339  AHMDYWRHARSIQAQSRLTAD 401
             +      A S Q Q + + +
Sbjct: 1567 GNNRSGEQANSQQQQQQQSGE 1587


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 172 TASQHRSLNRTIAADSPRFLVLRHTTSLPHHAATVHRSPRPDHQR 306
           T   H  L+   +   PR   L  TT   HH    HR  R D++R
Sbjct: 129 TNESHACLSTGGSCYWPRGKNLGGTTL--HHGMAYHRGHRKDYER 171


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 467 LEACGESRLSLNAACVSPVLLEVCGESRLS 378
           L  CG + ++     +SP+L  VC ++RL+
Sbjct: 45  LPFCGPNVINPFFCDMSPLLSLVCADTRLN 74


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 259 HHAATVHRSPRPDHQRLGSHISGVAALHTWT 351
           ++ A +   P P +    SHI    ++ T+T
Sbjct: 429 YNPALIQSQPSPQYPSTSSHILQQPSIRTYT 459


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 178 SQHRSLNRTIAADSP 222
           S H SLN T+  D P
Sbjct: 255 SLHASLNHTLTKDQP 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,638
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)