Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0158
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40950.1 68415.m05056 bZIP transcription factor family protei... 36 0.017
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 32 0.21
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)... 29 1.9
At2g33880.1 68415.m04159 expressed protein 29 1.9
At3g51640.1 68416.m05663 expressed protein 29 2.6
At1g35820.1 68414.m04451 hypothetical protein 28 3.4
At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar... 28 3.4
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 4.5
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 28 4.5
At4g03000.2 68417.m00408 expressed protein contains similarity t... 28 4.5
At4g03000.1 68417.m00407 expressed protein contains similarity t... 28 4.5
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 28 4.5
At2g27990.1 68415.m03392 homeodomain-containing protein 28 4.5
At4g37430.1 68417.m05298 cytochrome P450 81F1 (CYP81F1) (CYP91A2... 27 5.9
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-... 27 5.9
At4g23360.1 68417.m03369 expressed protein predicted proteins, A... 27 5.9
At4g16670.1 68417.m02518 expressed protein 27 5.9
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 27 5.9
At1g28300.1 68414.m03473 transcriptional factor B3 family protei... 27 5.9
At3g25655.1 68416.m03193 expressed protein 27 7.9
>At2g40950.1 68415.m05056 bZIP transcription factor family protein
similar to AtbZIP transcription factor GI:17065880 from
[Arabidopsis thaliana]; contains Pfam profile: bZIP
transcription factor PF00170
Length = 721
Score = 35.9 bits (79), Expect = 0.017
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = +3
Query: 90 FIISASRTSATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTAHNFTASSRR 269
F S TS IPA + + A H +++ Q ++ R LPG + N T +R
Sbjct: 592 FQFDVSSTSGAIIPAATNVSAEHGKNTTDTHKQQNRRILRGLPIPLPG-SDFNLTKEHQR 650
Query: 270 NSSSQPTTGSSTLGVTHL---RRGSSAHMD 350
NSSS+ +S++ V+ L R G +D
Sbjct: 651 NSSSKEIKPASSMVVSVLVDPREGGDGDID 680
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 32.3 bits (70), Expect = 0.21
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 343 CAELPRRRCVTPSVDDPVVGCDELLRRDEAVKL-CAVGPGSAVSRLRWSC*GCDAGLL 173
C+ R C+T DD +V CD D+A + C P +V W C C A +L
Sbjct: 400 CSSCLCRNCLTDKDDDKIVLCDGC---DDAYHIYCMRPPCESVPNGEWFCTACKAAIL 454
>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
gibberellin-responsive protein 2 identical to SP|P46688
Gibberellin-regulated protein 2 precursor {Arabidopsis
thaliana}
Length = 99
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 499 VLRLACKGQCCSKHAVSRG*A*MLRACRQCCSK 401
V+++ C G+C + + S LRAC CCS+
Sbjct: 36 VVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSR 68
>At2g33880.1 68415.m04159 expressed protein
Length = 378
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +3
Query: 141 QIKARH*QSSHSKPASQPQQDHRSRLTALPGPTAHNFTASSRRNSSSQPTTGSSTLGVTH 320
+++ H S HS P +QPQ P P+A + ++SS +S S S T+
Sbjct: 114 KLRLLHNHSKHSLPQTQPQPQ--------PQPSASSSSSSSSSSSKSTKPRKSKNKNNTN 165
Query: 321 LRRGSSAHM 347
L G S M
Sbjct: 166 LSLGGSQMM 174
>At3g51640.1 68416.m05663 expressed protein
Length = 826
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 168 SHSKPASQPQQD-HRSRLTALPGPTAHNFTASSRRNSSSQPTTGSS 302
S KP+ +P++ H+ + P P + N SR +++ QP SS
Sbjct: 479 SEPKPSREPKKSWHQLFARSTPAPVSSNVNTISRPSTNPQPNVQSS 524
>At1g35820.1 68414.m04451 hypothetical protein
Length = 287
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 246 NFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDY 353
NF +++RR SS+Q + GSS + + RGS +
Sbjct: 149 NFWSTARRGSSAQRSGGSSRVSIGSGSRGSQRRQSF 184
>At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 388
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -1
Query: 146 YLRECGDCGSRSS*CADDESEDCVFRSRRRSPVLGVLTTKGKIFH 12
Y EC DC S + D +ED + +RR + G++ H
Sbjct: 105 YCEECKDCKSSKTNWCDRYAEDFISNTRRYGMASRFKDSSGEVIH 149
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 125 NPRILADKSTSLTVVPQQASIAASTGPS 208
+P LA T L VVP++ IA TGP+
Sbjct: 188 DPSTLAPPPTPLPVVPREKPIAKPTGPA 215
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 277 HRSPRPDHQRLGSHISGVAALH--TWTTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLD 450
H +PR Q GS ISG + W +G H ++ SPQ + H ++ +
Sbjct: 397 HNNPRARGQGQGSRISGEMGRNHGGWYSGQLHNSYSSYSASPQRPMEQPEYHPRWRREIV 456
Query: 451 S 453
S
Sbjct: 457 S 457
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 169 PTASQHRSLNRTIAADSPRFLVLRHTTSLPHHAATVHRSPRPDHQRLGSHISGVAALHTW 348
P A +L+ + +DSP V H T+LP + A +P ++ GS ++ T
Sbjct: 384 PLAESSSTLSNSTKSDSPALDVKEHVTALPANNAP---APVASEKKSGSEPEEKPSVSTK 440
Query: 349 TTGDTHAA 372
D +AA
Sbjct: 441 PAPDYYAA 448
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 169 PTASQHRSLNRTIAADSPRFLVLRHTTSLPHHAATVHRSPRPDHQRLGSHISGVAALHTW 348
P A +L+ + +DSP V H T+LP + A +P ++ GS ++ T
Sbjct: 384 PLAESSSTLSNSTKSDSPALDVKEHVTALPANNAP---APVASEKKSGSEPEEKPSVSTK 440
Query: 349 TTGDTHAA 372
D +AA
Sbjct: 441 PAPDYYAA 448
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 267 RNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQA 380
+N + P +G S+ V + + D+WR++RSI++
Sbjct: 90 KNYENVPNSGESSEKVCKVTQKGGLFYDFWRNSRSIKS 127
>At2g27990.1 68415.m03392 homeodomain-containing protein
Length = 584
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 237 TAHNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMD 350
T+HN S+R N+ S P+ + G++ +R +MD
Sbjct: 503 TSHNIEPSNRPNTVSSPSHEQTLTGLSGTKRSRLEYMD 540
>At4g37430.1 68417.m05298 cytochrome P450 81F1 (CYP81F1) (CYP91A2)
identical to cytochrome P450 81F1 (91A2) (SP:O65790)
[Arabidopsis thaliana]
Length = 500
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 228 PGPTAHNFTASSRRNSSSQPTTGSST-LGVTHLRRGSSAHMDYWRHARSIQAQSRLTADF 404
P +FT + SS+P ++ + H G++ + D+WR+ R I +Q L++
Sbjct: 78 PSLAQESFTGQNDIVLSSRPLQLTAKYVAYNHTTVGTAPYGDHWRNLRRICSQEILSSHR 137
Query: 405 EQHWRHAR 428
+++H R
Sbjct: 138 LINFQHIR 145
>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 635
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 113 FGYHNPRILADKSTSLTVVPQQASIAASTGPSQ-PTHRAS 229
FGY +I ADKS TV+P Q + PS P+ R S
Sbjct: 477 FGYQTAQIPADKS-KRTVIPDQPPTVNTYNPSPLPSDRIS 515
>At4g23360.1 68417.m03369 expressed protein predicted proteins,
Arabidopsis thaliana contains Pfam profile PF03080:
Arabidopsis proteins of unknown function; expression
supported by MPSS
Length = 873
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 86 LIHHQRIKNFGYHNPRILADKSTSLT 163
L+H QR+K+ G+ PR K+T+ T
Sbjct: 127 LMHAQRLKSMGFDGPRPFLTKTTNNT 152
>At4g16670.1 68417.m02518 expressed protein
Length = 429
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 101 RIKNFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFI 280
R++ H+ +A +T++ V + G + AS S HCL +
Sbjct: 157 RVEKAHLHSAVSIASLATAIAAVTASGNQDGFAGSKMSSALASASELLASHCLELAELAG 216
Query: 281 AAHDRIINA 307
A HDR+++A
Sbjct: 217 ADHDRVVSA 225
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/63 (23%), Positives = 25/63 (39%)
Frame = +3
Query: 186 SQPQQDHRSRLTALPGPTAHNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHA 365
S + ++ R+ PG T + R + P TG G+ HLR R+
Sbjct: 12 SYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNE 71
Query: 366 RSI 374
R++
Sbjct: 72 RTV 74
>At1g28300.1 68414.m03473 transcriptional factor B3 family protein /
leafy cotyledon 2 (LEC2) nearly identical to LEAFY
COTYLEDON 2 [Arabidopsis thaliana] GI:15987516; contains
Pfam profile PF02362: B3 DNA binding domain
Length = 363
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 244 TTSLPHHAATVHRSPRPDHQRLGS 315
TT L HH AT P DH +GS
Sbjct: 327 TTDLQHHQATSSSMPPEDHAYVGS 350
>At3g25655.1 68416.m03193 expressed protein
Length = 86
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 89 SEDCVFRSRRRSPVLGVLTTKGKIFH 12
SE + ++R R ++G T KG++FH
Sbjct: 35 SETEIVQTRSRQEIIGGFTFKGRVFH 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,205
Number of Sequences: 28952
Number of extensions: 244386
Number of successful extensions: 926
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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