Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0157
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   1.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.7  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   2.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   6.7  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   6.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.8  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 407  NPVLIFSAREQVFSESTNFALDVLA 333
            +PV I  ARE +FSE+T    DV A
Sbjct: 1024 HPVAILGAREYIFSENTGMLGDVAA 1048


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 407  NPVLIFSAREQVFSESTNFALDVLA 333
            NPV I  ARE +FSE+     DV A
Sbjct: 1182 NPVAIMGAREYIFSENIGILGDVAA 1206


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 518 EILDNNF*NFINRKHIIDFDTQHRHTMKYET 426
           E  D NF  F+NR   +DFD+ H   +   T
Sbjct: 775 EDADRNFQEFLNRMSSLDFDSFHNFVVSVLT 805


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -2

Query: 518  EILDNNF*NFIN-----RKHIIDFDTQHRHTMKYETVVKE*TNPVLIFSAREQVFSESTN 354
            +++D N  N+I      R  + +F+     T+   T      +PV +  ARE VFSE++ 
Sbjct: 1074 QLIDANQDNYIEECMKIRNVLSEFEEMDCATLTPYTKKGNARHPVAMLGAREYVFSENSG 1133

Query: 353  FALDVLA 333
               DV A
Sbjct: 1134 ILGDVAA 1140



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 204  VRAEYSKL---TQDNYVELRIKVLNQFSQIPKL 293
            VR EY +L    QDNY+E  +K+ N  S+  ++
Sbjct: 1068 VRGEYLQLIDANQDNYIEECMKIRNVLSEFEEM 1100


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 407  NPVLIFSAREQVFSESTNFALDVLA 333
            +PV I  ARE +FSE+     DV A
Sbjct: 1206 HPVAILGAREYIFSENIGILGDVAA 1230


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 165 AASREEYDAHAKLVRAEYSKLTQDNYVELRIKVLNQFSQIPK--LFHSPEFACF 320
           A + EEY  H+K + AE  +L++   +E  +K +N   + PK  +  +P F  F
Sbjct: 674 ATATEEYHEHSKQLEAEKQELSK---LEDGLKSVNLTEEAPKPEVDSTPRFPSF 724


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = -3

Query: 286 GI*ENWFSTLIRSST*LSWVSFE 218
           G+ +N++S+LI SST +S ++FE
Sbjct: 564 GLLKNYYSSLIDSSTSISNINFE 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,398
Number of Sequences: 5004
Number of extensions: 47124
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)