Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0157
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0111 - 10129531-10129563,10129645-10129812,10130366-101304...    30   2.3  
04_01_0266 - 3563075-3563109,3563405-3564754,3564862-3564965,356...    29   5.3  

>11_03_0111 -
           10129531-10129563,10129645-10129812,10130366-10130484,
           10130589-10130650,10131043-10131119,10131659-10131838
          Length = 212

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 180 EYDAHAKLVRAEYSK--LTQDNYVELRIKVLNQFSQIPKLFHSP--EFACFEPAARENIE 347
           EY+    L+    SK  LT  NY EL +       +  ++   P  +FA  EP + E IE
Sbjct: 71  EYEGKVLLIVNVASKCGLTNSNYKELNVLYEKYKEKGLEILAFPCNQFAGQEPGSNEEIE 130

Query: 348 REICT 362
           + +CT
Sbjct: 131 QTVCT 135


>04_01_0266 -
           3563075-3563109,3563405-3564754,3564862-3564965,
           3564967-3565421
          Length = 647

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 349 AKFVLSENTCSRAEKIKTGFVYSLTTVSYFIVWRCCVSKSIICFRLMKFQKLLSSISHM 525
           A +VL ++   R+EK     V  L T+  FIVW C V +     R   F  + +S+  +
Sbjct: 119 AGYVLYKHIIIRSEKT----VLLLATILMFIVWPCQVHERTWALRCSNFGSIRNSLKEL 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,359
Number of Sequences: 37544
Number of extensions: 273693
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)