Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0157
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_49214| Best HMM Match : HSF_DNA-bind (HMM E-Value=2.40042e-42)      29   4.1  
SB_26113| Best HMM Match : CcmD (HMM E-Value=6.7)                      28   7.1  
SB_42009| Best HMM Match : DUF1531 (HMM E-Value=6.1)                   28   9.4  
SB_20557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)                     28   9.4  

>SB_41003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +3

Query: 246 ELRIKVLNQFSQIPKLFHSPEFACFEPAARENIEREICTLREHLLTGRKD 395
           ++ +   N++++ PK F+SPE      A  ENIE+E C ++E +  GRK+
Sbjct: 21  KIGVLAANKWTEFPK-FNSPEAKAELDAFAENIEKE-CGIKE-INFGRKE 67


>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1395

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 252  RIKVLNQFSQIPKLFHSPEFACFEPAARENIEREICTLRE 371
            R+   N++++ PK F+SPE      A  ENIE+E C ++E
Sbjct: 1131 RVLAANKWTEFPK-FNSPEAKAELDAFAENIEKE-CGIKE 1168


>SB_49214| Best HMM Match : HSF_DNA-bind (HMM E-Value=2.40042e-42)
          Length = 284

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 294 FHSPEFACFEPAARENIEREI 356
           FH+P F C +P   EN++R++
Sbjct: 98  FHNPNFQCGQPQLLENVKRKV 118


>SB_26113| Best HMM Match : CcmD (HMM E-Value=6.7)
          Length = 198

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 442 VWRCCVSKSIICFRLMKFQKLLSSISHMYKL 534
           ++RC +S SI CF +MKF +L+ +   +Y L
Sbjct: 24  MYRCLISSSIKCF-VMKFTELVKNHQIIYHL 53


>SB_42009| Best HMM Match : DUF1531 (HMM E-Value=6.1)
          Length = 166

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 246 ELRIKVLNQFSQIPKLFHSPEFACFEPAARENIEREICTLRE 371
           ++ +   N++++ PK F+SPE      A  ENIE+E C ++E
Sbjct: 4   KIGVLAANKWTEFPK-FNSPEAKAELDAFAENIEKE-CGIKE 43


>SB_20557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 246 ELRIKVLNQFSQIPKLFHSPEFACFEPAARENIEREICTLRE 371
           ++ +   N++++ PK F+SPE      A  ENIE+E C ++E
Sbjct: 4   KIGVLAANKWTEFPK-FNSPEAKAELDAFAENIEKE-CGIKE 43


>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
          Length = 934

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 246 ELRIKVLNQFSQIPKLFHSPEFACFEPAARENIEREICTLRE 371
           ++ +   N++++ PK F+SPE      A  ENIE+E C ++E
Sbjct: 4   KIGVLAANKWTEFPK-FNSPEAKAELDAFAENIEKE-CGIKE 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,001,558
Number of Sequences: 59808
Number of extensions: 331679
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)