Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0157
         (756 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3918|AAF47241.2|  308|Drosophila melanogaster CG3579-PA...    50   3e-06
BT028770-1|ABI34151.1|   94|Drosophila melanogaster GM28229p pro...    29   9.1  

>AE013599-3918|AAF47241.2|  308|Drosophila melanogaster CG3579-PA
           protein.
          Length = 308

 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +3

Query: 165 AASREEYDAHAKLVRAEYSKLTQDNYVELRIKVLNQFSQIPKLFHSPEF-ACFEPAAREN 341
           AAS EEY  +  L+R+EY+ L    Y  +RIKVL     IP ++ + ++   +E  AR N
Sbjct: 238 AASPEEYKHYTTLLRSEYANLDDATYKAMRIKVLETLLMIPSIYATGDYHDKYEELARAN 297

Query: 342 IEREICTLRE 371
           I  EI  L++
Sbjct: 298 IRNEISELKK 307


>BT028770-1|ABI34151.1|   94|Drosophila melanogaster GM28229p
           protein.
          Length = 94

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 231 QDNYVELRIKVLNQFSQIPKLFHSPE 308
           Q+N +EL+IK+  +  Q  K+F SPE
Sbjct: 7   QNNKIELKIKISEESDQNGKVFKSPE 32


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,434,986
Number of Sequences: 53049
Number of extensions: 475461
Number of successful extensions: 1003
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)