Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0157
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical pr...    35   0.072
Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    30   2.0  
U39853-3|AAT92078.1|  151|Caenorhabditis elegans S. cerevisiae f...    29   4.7  

>Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical
           protein T09F3.5 protein.
          Length = 528

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
 Frame = +3

Query: 270 QFSQIPKLFHSPEFACFEPAARENIERE-----ICTLREHLLTGRKD*NWIRLLFDHR-- 428
           +++  P      E A  E A ++ ++ E     I T   H +TG +   WIR   +HR  
Sbjct: 269 RYAPFPVTLFRAELAAIEEALKQTVDAELKNVTIITSSAHFMTGWQR-RWIRTTEEHRPY 327

Query: 429 ---FIFHSVAMLCIKIDNM 476
              F F  +  LC +IDN+
Sbjct: 328 TGKFYFDRICDLCARIDNV 346


>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 414 LFDHRFIFHSVAMLCIKIDNMFSINEIS 497
           +F H FIFHS+  LC  + + F + E+S
Sbjct: 18  IFRHLFIFHSITALCDHMLSKFVVVEVS 45


>U39853-3|AAT92078.1|  151|Caenorhabditis elegans S. cerevisiae
           fis1-related protein2, isoform b protein.
          Length = 151

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 440 MKYETVVKE*TNPVLIFSAREQ 375
           M Y T+++E TNP ++ +AREQ
Sbjct: 1   MDYGTILEERTNPAVLMNAREQ 22


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,431
Number of Sequences: 27780
Number of extensions: 266104
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)