Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0157
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.25 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 186 DAHAKLVRAEYSKLTQDNYVELRIKVLNQFSQIPKLFHSPEFACFEPAARENIEREICTL 365
           D HAKLV+A + + T D  +++ +     ++ +     +P    F   + E    ++C L
Sbjct: 553 DTHAKLVQAAFEQNTTDQSMDIDVCDNQTYTSLQMAMKNP--IEFTDLSNERKYEDVCVL 610

Query: 366 R 368
           +
Sbjct: 611 K 611


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 562 MTSYDLTFL*YVCKKKPYK 618
           +T +DL FL   CKKK  K
Sbjct: 384 ITMFDLDFLTNACKKKDDK 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,472
Number of Sequences: 438
Number of extensions: 3318
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)