Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0156
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    42   7e-05
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    30   0.38 
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.0  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   8.2  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   8.2  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 28/126 (22%), Positives = 55/126 (43%)
 Frame = +1

Query: 166 KKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRVYFIPACIIKYKCV 345
           KK L+++  L   L +I     L++HG+ ++Y  +  +        +Y         K V
Sbjct: 23  KKSLLLERDLSGILGQIVTTNTLQEHGIPQVYWFNENIPNDIEKKTIYLCRPTYENAKLV 82

Query: 346 LDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWELMVLDDQ 525
              +         I       +I++P     F+++L+ +G++G + +  +    + LD  
Sbjct: 83  ATHVRQFQRDMLRIEST----VIVLPTSNILFETVLQEEGVFGELLVTEWPLHAVPLDKD 138

Query: 526 LLSLEL 543
           LLSLEL
Sbjct: 139 LLSLEL 144


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
 Frame = +1

Query: 169 KDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRVYFIPACIIKYKCVL 348
           K LI D +  + +  +  ++ LR+HGV     +     P A+   +YF+       + ++
Sbjct: 47  KVLIFDKAGSETISSVLRISDLRKHGVTVHMNITSFRQPIADVPAIYFVQPTQENIELII 106

Query: 349 DQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVV-KLHAFAWELMVLDDQ 525
           + +S  + ++  +     F   I   +L  F  +        ++ +++      +VL+  
Sbjct: 107 EDLSKGLYESAYVC----FSSTISRALLEQFAELASKTNTSHMIHQVYDQYLNYVVLESD 162

Query: 526 LLSLELPFLF 555
             SL+LP +F
Sbjct: 163 FFSLQLPKIF 172


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -3

Query: 314 IKYTLFGFAVGPSWGSILYILSTPCCLSHVTP--HILSKALIKDGSIIKSFFSPH*LNIF 141
           +K+ +   ++   +  ILY +   C +    P  H+L+  L+KDG++   F  P  L   
Sbjct: 697 LKFFVRERSITNKYEDILYKILEACFMQFRIPIQHVLN-ILVKDGTLNFCFLKPLLLKWM 755

Query: 140 CNLFCEISDNDDNLRL 93
            +    I  NDD +++
Sbjct: 756 NDYETRIHQNDDEIQV 771


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 515 RTINSHANACNLTTPYKPLL 456
           R +NS  NAC+L  P+K +L
Sbjct: 497 RRLNSLVNACSLIQPFKLIL 516


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 467 YMVWLNYMHSHG 502
           Y  +LNY+HSHG
Sbjct: 75  YFTFLNYLHSHG 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,515
Number of Sequences: 5004
Number of extensions: 69266
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)