Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0156
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0622 - 8175226-8175312,8175674-8175763,8176370-8176457,817...    39   0.005
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    30   1.6  
05_03_0263 + 11234850-11235044,11235413-11237341                       28   8.5  

>04_01_0622 -
           8175226-8175312,8175674-8175763,8176370-8176457,
           8177021-8177095,8177754-8177821,8177898-8177955,
           8178862-8178942,8179968-8180038,8180144-8180225,
           8182327-8182449,8183023-8183129,8183201-8183263,
           8183877-8183936,8184100-8184151,8185566-8185598,
           8185820-8185871,8185965-8186028,8186693-8186749,
           8186962-8187006,8187083-8187190,8188147-8188212,
           8188382-8188492,8190841-8191035,8191419-8191499,
           8191591-8191630,8191764-8191816
          Length = 669

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 33/160 (20%), Positives = 74/160 (46%), Gaps = 1/160 (0%)
 Frame = +1

Query: 145 ILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVD-KIYKMDPQLGPTANPNRVYFIPA 321
           IL     KK ++IDP L   L  I   + L+++G + ++   +P     A   ++ ++  
Sbjct: 28  ILKSIRGKKCVVIDPKLAGTLSLILQTSLLKEYGAELRLLSAEPLQTECA---KILYLVR 84

Query: 322 CIIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAW 501
             +K+   +  I+S I  +        F +  +P+   + + ILE + ++  + L  +  
Sbjct: 85  SELKF---MKLIASQIKNDEPKGLQREFFLYFVPRRTVACEKILEEEKVHQKLTLGEYPL 141

Query: 502 ELMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTL 621
            L+ LD+ ++  EL    ++  ++ + S +  VA ++  L
Sbjct: 142 YLVPLDEDVICFELDHSLQECLIEGDTSSVWHVAKAIHKL 181


>07_03_0997 - 23203166-23203330,23203627-23203693,23203771-23203862,
            23204820-23204956,23205050-23205116,23205212-23205278,
            23205356-23205441,23206061-23206153,23206337-23206522,
            23207316-23207372,23207455-23207582,23207662-23207731,
            23207815-23207950,23208378-23208529,23208606-23208680,
            23208765-23208929,23209063-23209128,23209229-23209333,
            23209929-23210132,23210462-23211715
          Length = 1123

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +1

Query: 328  IKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSIL 453
            I+ K V DQ+SS++ +  S AD+ G H   +PK+++ F  +L
Sbjct: 1032 IEAKVVHDQLSSMVER--SDADILGPHSQYLPKIVSIFAEVL 1071


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = -3

Query: 338 LYFMMHAGIKYTLFGFAVGPSWGSILYILSTPCCLSHVTPHILSKALIK 192
           LYF+  +G+K  +     G SWG ++ +++T  C+  +   +L+  +++
Sbjct: 238 LYFVS-SGLKTNVLTIKGGDSWGLLVLVVAT-ACIGKIGGTVLASLIVR 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,603
Number of Sequences: 37544
Number of extensions: 392854
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)