Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0156
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_3847| Best HMM Match : Sec1 (HMM E-Value=8.8e-14)                   31   1.2  

>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 403 FHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWELMVLD-DQLLSLELPFLFKQ 561
           FHI++    +NS DS L  +    +  L  F W  M+ D D + SL  P L +Q
Sbjct: 126 FHILVRLLSVNSQDSALLEQVFSALGYLFKFLWRYMIKDMDNVYSLYSPLLSQQ 179


>SB_3847| Best HMM Match : Sec1 (HMM E-Value=8.8e-14)
          Length = 605

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/54 (27%), Positives = 32/54 (59%)
 Frame = +1

Query: 403 FHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWELMVLDDQLLSLELPFLFKQL 564
           +HI+ +P+     ++ L++ G+   V +  +  + + LD+ LLSLE+   FK++
Sbjct: 187 YHILFVPRKTVLCENRLKALGV-SFVNIEEYPLDFIPLDNDLLSLEMESSFKRV 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,693,677
Number of Sequences: 59808
Number of extensions: 469246
Number of successful extensions: 933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)