Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0156
(718 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sortin... 89 1e-17
AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens ... 89 1e-17
AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sortin... 89 1e-17
AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sortin... 89 1e-17
AL357472-1|CAB93109.1| 528|Homo sapiens VPS33B protein. 56 1e-07
BC016617-1|AAH16617.1| 596|Homo sapiens vacuolar protein sortin... 53 1e-06
AF439857-1|AAL33577.1| 596|Homo sapiens vacuolar sorting protei... 53 1e-06
>BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sorting
33 homolog B (yeast) protein.
Length = 617
Score = 89.0 bits (211), Expect = 1e-17
Identities = 51/164 (31%), Positives = 90/164 (54%)
Frame = +1
Query: 145 ILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRVYFIPAC 324
+L Q KKDL I+ L+ L+RI V+ L+QH VDK+YK++ + ++N + +
Sbjct: 29 LLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPR 88
Query: 325 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWE 504
I + I+SL++ + + +I P+ + + +LE +G+YG V +A+
Sbjct: 89 IKNMR----YIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFS 144
Query: 505 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTG 636
L+ LD LLS+ELP F+ F++ +Q ++ VA +L L + G
Sbjct: 145 LLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG 188
>AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens
cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
Length = 617
Score = 89.0 bits (211), Expect = 1e-17
Identities = 51/164 (31%), Positives = 90/164 (54%)
Frame = +1
Query: 145 ILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRVYFIPAC 324
+L Q KKDL I+ L+ L+RI V+ L+QH VDK+YK++ + ++N + +
Sbjct: 29 LLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPR 88
Query: 325 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWE 504
I + I+SL++ + + +I P+ + + +LE +G+YG V +A+
Sbjct: 89 IKNMR----YIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFS 144
Query: 505 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTG 636
L+ LD LLS+ELP F+ F++ +Q ++ VA +L L + G
Sbjct: 145 LLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG 188
>AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sorting
protein 33B protein.
Length = 617
Score = 89.0 bits (211), Expect = 1e-17
Identities = 51/164 (31%), Positives = 90/164 (54%)
Frame = +1
Query: 145 ILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRVYFIPAC 324
+L Q KKDL I+ L+ L+RI V+ L+QH VDK+YK++ + ++N + +
Sbjct: 29 LLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPR 88
Query: 325 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWE 504
I + I+SL++ + + +I P+ + + +LE +G+YG V +A+
Sbjct: 89 IKNMR----YIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFS 144
Query: 505 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTG 636
L+ LD LLS+ELP F+ F++ +Q ++ VA +L L + G
Sbjct: 145 LLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG 188
>AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sorting
33B protein.
Length = 617
Score = 89.0 bits (211), Expect = 1e-17
Identities = 51/164 (31%), Positives = 90/164 (54%)
Frame = +1
Query: 145 ILSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRVYFIPAC 324
+L Q KKDL I+ L+ L+RI V+ L+QH VDK+YK++ + ++N + +
Sbjct: 29 LLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPR 88
Query: 325 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWE 504
I + I+SL++ + + +I P+ + + +LE +G+YG V +A+
Sbjct: 89 IKNMR----YIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFS 144
Query: 505 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTG 636
L+ LD LLS+ELP F+ F++ +Q ++ VA +L L + G
Sbjct: 145 LLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG 188
>AL357472-1|CAB93109.1| 528|Homo sapiens VPS33B protein.
Length = 528
Score = 56.0 bits (129), Expect = 1e-07
Identities = 29/94 (30%), Positives = 53/94 (56%)
Frame = +1
Query: 355 ISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLHAFAWELMVLDDQLLS 534
I+SL++ + + +I P+ + + +LE +G+YG V +A+ L+ LD LLS
Sbjct: 6 IASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFSLLPLDVDLLS 65
Query: 535 LELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTG 636
+ELP F+ F++ +Q ++ VA +L L + G
Sbjct: 66 MELPEFFRDYFLEGDQRWINTVAQALHLLSTLYG 99
>BC016617-1|AAH16617.1| 596|Homo sapiens vacuolar protein sorting
33 homolog A (S. cerevisiae) protein.
Length = 596
Score = 52.8 bits (121), Expect = 1e-06
Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 1/183 (0%)
Frame = +1
Query: 148 LSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRVYFIPACI 327
L +C K ++ D L I + L++H V+K++ + P A+ + F
Sbjct: 27 LDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPR 86
Query: 328 IKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYG-VVKLHAFAWE 504
++ ++D I+ + FHI+ +P+ + L+ G+ G + ++ +
Sbjct: 87 LE---LMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLD 143
Query: 505 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSAGVL 684
L+ D LLS+E FK+ +++ +Q+ L A L TL + G + G+ + V
Sbjct: 144 LIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVA 203
Query: 685 DML 693
+M+
Sbjct: 204 NMM 206
>AF439857-1|AAL33577.1| 596|Homo sapiens vacuolar sorting protein
33A protein.
Length = 596
Score = 52.8 bits (121), Expect = 1e-06
Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 1/183 (0%)
Frame = +1
Query: 148 LSQCGEKKDLIIDPSLIKALERICGVTWLRQHGVDKIYKMDPQLGPTANPNRVYFIPACI 327
L +C K ++ D L I + L++H V+K++ + P A+ + F
Sbjct: 27 LDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPR 86
Query: 328 IKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYG-VVKLHAFAWE 504
++ ++D I+ + FHI+ +P+ + L+ G+ G + ++ +
Sbjct: 87 LE---LMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLD 143
Query: 505 LMVLDDQLLSLELPFLFKQLFVDQNQSLLSGVAMSLWTLFHVTGRPKVMCSFGKLSAGVL 684
L+ D LLS+E FK+ +++ +Q+ L A L TL + G + G+ + V
Sbjct: 144 LIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVA 203
Query: 685 DML 693
+M+
Sbjct: 204 NMM 206
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,350,508
Number of Sequences: 237096
Number of extensions: 2238655
Number of successful extensions: 3264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3260
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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