Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0156
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    31   1.1  
U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 307 ILYLGLPLDRVGDPFCIFCQLHVV*AMSHRIF 212
           ++ + LP+  +G P CI+  LH+V A+ + +F
Sbjct: 108 LILMFLPITHIGVPVCIYIALHIVFALYYFLF 139


>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 640 VSLSHEIMSIKTLLHQTVRTGFGQQITV*IKM-VTLNSITD-HRGPL-IPMRMH 488
           + LSH+     TLLH    TG   Q+ V ++    LN + D H+ P+ + +R H
Sbjct: 514 IHLSHKFSGGNTLLHFAAMTGSPCQVDVLLRNGAPLNELNDLHKSPVALAIRRH 567


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 325 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLH 489
           +IK     DQI+ L+  NPS A  N   +    K++N+  S+ E+ G+  +  +H
Sbjct: 381 LIKMSMCWDQINGLMDVNPS-AYSNNVSLSFRNKLINAAFSMQEALGIRNIGHVH 434


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 325 IIKYKCVLDQISSLISQNPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKLH 489
           +IK     DQI+ L+  NPS A  N   +    K++N+  S+ E+ G+  +  +H
Sbjct: 517 LIKMSMCWDQINGLMDVNPS-AYSNNVSLSFRNKLINAAFSMQEALGIRNIGHVH 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,200,732
Number of Sequences: 27780
Number of extensions: 373743
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)