Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0156
(718 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 23 2.2
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 2.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 8.8
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 482 LTTPYKPLLSNIESNEFK 429
L+T PLL NI SN+F+
Sbjct: 339 LSTTVNPLLYNIMSNKFR 356
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 23.4 bits (48), Expect = 2.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 286 LDRVGDPFCIFCQLH 242
++ +GD +C+ C LH
Sbjct: 535 VETIGDAYCVACGLH 549
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 287 VGPSWGSILYILSTPCCLSHVTP 219
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 287 VGPSWGSILYILSTPCCLSHVTP 219
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 287 VGPSWGSILYILSTPCCLSHVTP 219
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 287 VGPSWGSILYILSTPCCLSHVTP 219
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 287 VGPSWGSILYILSTPCCLSHVTP 219
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 287 VGPSWGSILYILSTPCCLSHVTP 219
V PSW +L++ PC L P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 485 NLTTPYKPLLSNIESNEFKTFG 420
N+T + LL N E+N+ T G
Sbjct: 36 NITMVLENLLMNYENNQLPTHG 57
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 33 SDRHEFWSLINRKVHNGSTTQS 98
SD H INRKVH+ +++ S
Sbjct: 398 SDLHHPNCKINRKVHHTTSSSS 419
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 287 VGPSWGSILYILSTPCCLSHVTP 219
V PSW +L++ PC L P
Sbjct: 358 VMPSWIKMLFLQWLPCLLRMSRP 380
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 287 VGPSWGSILYILSTPCCLSHVTP 219
V PSW +L++ PC L P
Sbjct: 358 VMPSWIKMLFLQWLPCLLRMSRP 380
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,471
Number of Sequences: 438
Number of extensions: 4648
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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