BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0151 (702 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma... 97 3e-21 SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.64 SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 27 3.4 SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 25 7.9 SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 7.9 >SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Manual Length = 127 Score = 96.7 bits (230), Expect = 3e-21 Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Frame = +3 Query: 72 MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVVGFENESLLTSG 248 MSWQ YVD L+ + + +AAI G+ VWA S GF +S E+ + GF++ + Sbjct: 1 MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60 Query: 249 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGE 428 G+ +AG +YI + I KL K G+ C+ T+ +++S Y E P +AA + E L + Sbjct: 61 GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120 Query: 429 YLITCGY 449 YL+ GY Sbjct: 121 YLVGVGY 127 >SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 749 Score = 29.1 bits (62), Expect = 0.64 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = -3 Query: 295 SVPLR*MYRVPAIVTPPLVSSDSFSKPTTIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 116 +VPL Y + T + S SKP+ +S + + P + H++PS ++A ++ Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546 Query: 115 L 113 L Sbjct: 547 L 547 >SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 26.6 bits (56), Expect = 3.4 Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 2/24 (8%) Frame = +1 Query: 607 SLVCTCDYFVD--SGPFLYAHRLL 672 +++C C+YF+D +GPFL +++ L Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQEL 345 >SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 557 Score = 25.4 bits (53), Expect = 7.9 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +3 Query: 459 KLAVI*EYYKIIFFPRGNK*LHFVYSIK 542 K+++I E K+ F P GNK HF +S+K Sbjct: 295 KVSLIQEGVKVDF-PEGNKFQHFFHSLK 321 >SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 997 Score = 25.4 bits (53), Expect = 7.9 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +1 Query: 154 MCGQSRKASKFQKMKWRR 207 MC S++ FQK KW R Sbjct: 19 MCNYSKRLDTFQKKKWPR 36 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,956,809 Number of Sequences: 5004 Number of extensions: 61152 Number of successful extensions: 146 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 325165428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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