Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0151
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p...   102   2e-22
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S...    99   2e-21
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p...    98   4e-21
At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic...    96   2e-20
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller...    93   1e-19
At1g62420.1 68414.m07042 expressed protein contains Pfam profile...    33   0.24 
At4g22260.1 68417.m03220 alternative oxidase, putative / immutan...    32   0.32 
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil...    29   3.0  
At4g37390.1 68417.m05294 auxin-responsive GH3 family protein sim...    29   3.0  
At1g12530.1 68414.m01451 hypothetical protein ; expression suppo...    29   3.9  
At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma mem...    28   6.9  
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-...    27   9.1  
At1g62660.1 68414.m07071 beta-fructosidase (BFRUCT3) / beta-fruc...    27   9.1  

>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
           profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
           thaliana]
          Length = 134

 Score =  102 bits (245), Expect = 2e-22
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 8/133 (6%)
 Frame = +3

Query: 72  MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVVGFENE 230
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E+  I+  F+  
Sbjct: 1   MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEP 60

Query: 231 SLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAAS 407
             L   G+ +AG +Y+ + G  + +IR K G  G+   KT Q++V  LYEEP+ P Q   
Sbjct: 61  GHLAPTGMFLAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNM 120

Query: 408 VVEKLGEYLITCG 446
           VVE+LG+YLI  G
Sbjct: 121 VVERLGDYLIEQG 133


>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
           SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
          Length = 168

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 55/130 (42%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
 Frame = +3

Query: 72  MSWQDYVDKQLM---ASRCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVVGFENESLL 239
           MSWQ YVD  LM   A   +T AAI G DG+VWA+S  F ++  +E+  I   F     L
Sbjct: 38  MSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPGTL 97

Query: 240 TSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 416
              G+ + G +Y+ + G  + +IR K G  GV   KT  A+V  +Y+EP+ P Q   VVE
Sbjct: 98  APTGLFLGGNKYMVIQGEPNAVIRGKKGAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVE 157

Query: 417 KLGEYLITCG 446
            LGEYLI  G
Sbjct: 158 NLGEYLIESG 167


>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
           profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 8/133 (6%)
 Frame = +3

Query: 72  MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVVGFENE 230
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E + I+  F+  
Sbjct: 1   MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEP 60

Query: 231 SLLTSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAAS 407
             L   G+ +AG +Y+ + G    +IR K G  G+   KT Q+ V  +YEEP+ P Q   
Sbjct: 61  GHLAPTGLFMAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNM 120

Query: 408 VVEKLGEYLITCG 446
           VVE+LG+YL+  G
Sbjct: 121 VVERLGDYLLEQG 133


>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
           to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
           thaliana]; identical to cDNA profilin (PRF2) GI:9965570
          Length = 131

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 55/130 (42%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
 Frame = +3

Query: 72  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVVGFENESLL 239
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+A I   FE    L
Sbjct: 1   MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAGHL 60

Query: 240 TSGGVTIAGTRYIYLSG-TDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 416
              G+ + G +Y+ + G    +IR K G  GV   KT QA+V  +Y+EP+   Q   VVE
Sbjct: 61  APTGLFLGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVE 120

Query: 417 KLGEYLITCG 446
           +LG+YLI  G
Sbjct: 121 RLGDYLIESG 130


>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
           Ara t 8 identical to profilin 1 (Allergen Ara t 8)
           SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
          Length = 131

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
 Frame = +3

Query: 72  MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVVGFENESLL 239
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+  I   FE    L
Sbjct: 1   MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60

Query: 240 TSGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVE 416
              G+ + G +Y+ + G    +IR K G  GV   KT QA+V   Y+EP+   Q   VVE
Sbjct: 61  APTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVE 120

Query: 417 KLGEYLI 437
           +LG+YLI
Sbjct: 121 RLGDYLI 127


>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 465

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +2

Query: 230 ITANEWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEDTASCGHFSL*RTHPTSAGRIC 409
           I  +E RR      +H+P W R  + +  W G    ++ T++  ++ +  T+ T+A + C
Sbjct: 199 IMCHEMRRSMKHVGIHVPPWRRNGYMQAKWFG---FYKRTSTTNNYEMVNTYDTTAFKGC 255

Query: 410 RGE 418
           + E
Sbjct: 256 KEE 258


>At4g22260.1 68417.m03220 alternative oxidase, putative / immutans
           protein (IM) identical to IMMUTANS from Arabidopsis
           thaliana [gi:4138855]; contains Pfam profile PF01786
           alternative oxidase
          Length = 351

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 552 PLITL*NIQNAVTYFPVEKILSYSTLRSRRASTSNNHR 439
           PL+TL   + AV+Y    ++L +  L SRR    NNHR
Sbjct: 17  PLVTLRRSRAAVSYSSSHRLLHHLPLSSRRLLLRNNHR 54


>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 559

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 304 MIWSVPLR*MYRVPAIVTPPLVSSDSFSKPTTI 206
           +IW++ L     +P I+T P+VS D +SKP  +
Sbjct: 307 VIWAITLP--LNLPRILTIPVVSEDKWSKPLAV 337


>At4g37390.1 68417.m05294 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 603

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 48  YF*LNLIKMSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVVGFEN 227
           YF +NL  M     V   +M +    +     HDG+  A++   E S  E+A + VG E 
Sbjct: 344 YFGINLKPMCKPSEVSYTIMPNMAYFEFLPHNHDGDGAAEASLDETSLVELANVEVGKEY 403

Query: 228 ESLLTS 245
           E ++T+
Sbjct: 404 ELVITT 409


>At1g12530.1 68414.m01451 hypothetical protein ; expression
           supported by MPSS
          Length = 192

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 658 RIKRVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIE 533
           R+K  ++ +NN +  +  S  L+RH   N+KT + S   F E
Sbjct: 32  RLKENEDLRNNMISVVKESTSLKRHGAQNMKTRQLSDAIFEE 73


>At2g22950.1 68415.m02725 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA7)
           identical to SP|O64806 Potential calcium-transporting
           ATPase 7, plasma  membrane-type (EC 3.6.3.8)
           (Ca(2+)-ATPase isoform 7) {Arabidopsis thaliana}; strong
           similarity to SP|O81108 Calcium-transporting ATPase 2,
           plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
           2) {Arabidopsis thaliana}
          Length = 1015

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 165 KSEGFEISKDEVAKIVVGFENESLLTSGGV 254
           K+ GF+I  DE+  IV G + + L   GGV
Sbjct: 90  KAAGFDICADELGSIVEGHDVKKLKFHGGV 119


>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 646

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 271 RVPAIVTPPLVSSDSFSKPTTIFATSSFEISKPSDF--AHTLPS 146
           R   ++T P+ +S   + PT+    +S EI K + F   H +PS
Sbjct: 416 RPQVVITNPVPTSSMSAPPTSWHPAASIEIMKSNGFMQTHNIPS 459


>At1g62660.1 68414.m07071 beta-fructosidase (BFRUCT3) /
           beta-fructofuranosidase / invertase, vacuolar identical
           to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis
           thaliana]; supported by full-length cDNA GI:14517549;
           identical to cDNA  Beta-fructosidase GI:3115854
          Length = 648

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 265 PAIVTPPLVSSDSFSKPTTIFATSS 191
           P +V PP + +  F  PTT + TSS
Sbjct: 229 PVLVPPPGIGAKDFRDPTTAWKTSS 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,791
Number of Sequences: 28952
Number of extensions: 320883
Number of successful extensions: 710
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)