BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0149 (772 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g05900.1 68416.m00664 neurofilament protein-related similar t... 34 0.090 At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.16 At5g44270.1 68418.m05418 hypothetical protein 33 0.21 At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 33 0.28 At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 32 0.36 At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 32 0.36 At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.48 At3g49990.1 68416.m05466 expressed protein 31 0.64 At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 31 0.64 At4g31880.1 68417.m04531 expressed protein 31 1.1 At5g63550.1 68418.m07976 expressed protein 30 1.5 At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 30 1.9 At1g34590.1 68414.m04299 hypothetical protein 30 1.9 At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 29 3.4 At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 3.4 At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 3.4 At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 4.5 At1g12080.2 68414.m01397 expressed protein 29 4.5 At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 5.9 At2g22450.1 68415.m02662 riboflavin biosynthesis protein, putati... 28 7.9 At2g18050.1 68415.m02098 histone H1-3 (HIS1-3) similar to histon... 28 7.9 At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 7.9 >At3g05900.1 68416.m00664 neurofilament protein-related similar to NF-180 (GI:632549) [Petromyzon marinus] similar to Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H) (Swiss-Prot:P12036) [Homo sapiens] Length = 673 Score = 34.3 bits (75), Expect = 0.090 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%) Frame = +2 Query: 401 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA-------TDAEGSADSAAII 559 + E + +K EE A E +K E++ + ++ EEK S T GSA + I Sbjct: 260 ELETEVEVVKAEETAEATEQAKVELEGKLEDVIVEEKDSEINSKDEKTSESGSALCSEEI 319 Query: 560 PNMVKKIDLAPNVXSDAAAVPEIKTPEAA--DAPKLADNPVDEDKPAD 697 + +++ + P ++ A I E A + + D P +E+KP++ Sbjct: 320 LSTIQESNTDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSE 367 >At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 protein GI:1279562 from [Medicago sativa] Length = 557 Score = 33.5 bits (73), Expect = 0.16 Identities = 15/51 (29%), Positives = 28/51 (54%) Frame = +2 Query: 398 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 550 P A AK+ +K ++ ++ +DS +E + +K KP+A D+ S D + Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS 191 >At5g44270.1 68418.m05418 hypothetical protein Length = 309 Score = 33.1 bits (72), Expect = 0.21 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 294 KRTI*PQKTPISRNRKPFLK*NPKKKSRKQNHPRFPMLKQ 413 +RTI PQ P+S PFL K++ K N P+ ++++ Sbjct: 256 RRTIVPQTRPVSNLNNPFLPHKSNKETTKPNSPKLRVIRR 295 >At4g29060.1 68417.m04157 elongation factor Ts family protein similar to SP|P35019 Elongation factor Ts (EF-Ts) {Galdieria sulphuraria}; contains Pfam profiles PF00627: UBA/TS-N domain, PF00889: Elongation factor TS, PF00575: S1 RNA binding domain Length = 953 Score = 32.7 bits (71), Expect = 0.28 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +2 Query: 419 ADIKVEE-PAAQ-PEDSKTEVQATVAEISKEEKPSATDAEGSADSAAI----IPNMVKKI 580 A++ EE P+++ P+ + EV AT AE EK T+ +A A IP + Sbjct: 392 AEVTSEEVPSSETPKVVEEEVIATKAEDDSPEKEEQTETLAAAAEAEEVVPPIPETKSEE 451 Query: 581 DLAPNVXSDAAAVPEIKTPEAADAPKLADNPVDEDKPAD 697 ++ N +A E+ +PEA + ++ V + P D Sbjct: 452 EIVENSIPPNSATDEVSSPEALASEEVEKEQVVAETPVD 490 Score = 31.1 bits (67), Expect = 0.84 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 25/126 (19%) Frame = +2 Query: 398 PDAEAKSADIKVEEPAAQPED--------SKT------EVQATVAEISKEEKPSATDA-E 532 P+AEA +VEE P + S+T EV AT AE EK T+ Sbjct: 373 PEAEASVTSAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAEDDSPEKEEQTETLA 432 Query: 533 GSADSAAIIPNM--------VKKIDLAPNVXSDAAAVPEIKTPEAADAPK-LADNPVDED 685 +A++ ++P + + + + PN +D + PE E + + +A+ PVDE Sbjct: 433 AAAEAEEVVPPIPETKSEEEIVENSIPPNSATDEVSSPEALASEEVEKEQVVAETPVDEV 492 Query: 686 K-PADI 700 K PA + Sbjct: 493 KTPAPV 498 >At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide Length = 225 Score = 32.3 bits (70), Expect = 0.36 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +2 Query: 422 DIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVX 601 ++K EEPA E +KTE T E KEE T +G A++ +++ Sbjct: 143 EVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKKPEVEEKKEEA 197 Query: 602 SDAAAVPE--IKTPEAADAPKLADNP 673 + A AV E +K PE +A+ P Sbjct: 198 TPAPAVVETPVKEPETTTTAPVAEPP 223 >At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide Length = 225 Score = 32.3 bits (70), Expect = 0.36 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +2 Query: 422 DIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVX 601 ++K EEPA E +KTE T E KEE T +G A++ +++ Sbjct: 143 EVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKKPEVEEKKEEA 197 Query: 602 SDAAAVPE--IKTPEAADAPKLADNP 673 + A AV E +K PE +A+ P Sbjct: 198 TPAPAVVETPVKEPETTTTAPVAEPP 223 >At5g26200.1 68418.m03118 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein Length = 342 Score = 31.9 bits (69), Expect = 0.48 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = -2 Query: 204 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 100 +T+SS+ AT R+G + TTS + A G A LT+A A Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146 >At3g49990.1 68416.m05466 expressed protein Length = 502 Score = 31.5 bits (68), Expect = 0.64 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 395 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 532 +P A+ D+K E P A+P KT Q + E K+E+ +A AE Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE 465 >At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos taurus} Length = 683 Score = 31.5 bits (68), Expect = 0.64 Identities = 29/99 (29%), Positives = 43/99 (43%) Frame = +2 Query: 398 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 577 P E K + K EE + E+ KTE ++ AE +EEK SA A I+ Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEK-SAAPATVETKKEEILAAPAPI 181 Query: 578 IDLAPNVXSDAAAVPEIKTPEAADAPKLADNPVDEDKPA 694 + + A P ++T A AP +A+ +E PA Sbjct: 182 VAETKKEETPVAPAP-VETKPA--APVVAETKKEEILPA 217 >At4g31880.1 68417.m04531 expressed protein Length = 873 Score = 30.7 bits (66), Expect = 1.1 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Frame = +2 Query: 416 SADIKVEEPAAQPEDSKTEVQATVAE---ISKEEKPSATDAEGSADSAAIIPNMVKKIDL 586 SA I EE + +P S+ +V + S + KP+ ++ S + KK+ Sbjct: 468 SASIATEEVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSETKVAKQSEKKVVG 527 Query: 587 APNVXSDAAAVPEIKTP---EAADAPKLADNPVDEDKPA 694 + N E K P +A D L + D +KPA Sbjct: 528 SDNAQESTKPKEEKKKPGRGKAIDEESLHTSSGDNEKPA 566 >At5g63550.1 68418.m07976 expressed protein Length = 530 Score = 30.3 bits (65), Expect = 1.5 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = +2 Query: 401 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKI 580 D + + +++VE+P+ + SK V+ + K+++PS A+GSA S + K Sbjct: 323 DTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPS---AKGSARSGEKSSKQIAKS 379 Query: 581 DLAP 592 +P Sbjct: 380 TSSP 383 >At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos taurus}; similar to GI:807956 from [Saccharomyces cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus Length = 573 Score = 29.9 bits (64), Expect = 1.9 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 3/100 (3%) Frame = +2 Query: 407 EAKSADIKVEE--PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKI 580 E + ++KVEE PA + + +A E EEKP AE + + A+ Sbjct: 145 EETTTEVKVEEEKPAVPAAEEEKSSEAAPVETKSEEKPE-EKAEVTTEKASSAEE----- 198 Query: 581 DLAPNVXSDAAAVPEIKTPEAADAPKLADN-PVDEDKPAD 697 D V + ++ + PE+A AP + + V E +P + Sbjct: 199 DGTKTVEAIEESIVSVSPPESAVAPVVVETVAVAEAEPVE 238 >At1g34590.1 68414.m04299 hypothetical protein Length = 820 Score = 29.9 bits (64), Expect = 1.9 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Frame = +2 Query: 395 IPDAEAKSADIKVEEPAAQPEDSKT-EVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 571 IPDA A D + P A PE S+ V A S DA ++ +IP+ Sbjct: 436 IPDAAAP-VDAGLISPRAAPEASRDGNVIPDAAAPVDAGLISLRDAPEASRDGNVIPDAA 494 Query: 572 KKIDLAPNVXSDAAAVPEIKTPEAADAPKLAD 667 +D AP+ +A P + EA A ++D Sbjct: 495 APVDAAPSEAQEAE--PSVAASEAVVALPVSD 524 >At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 370 Score = 29.1 bits (62), Expect = 3.4 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = +2 Query: 413 KSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK-KIDLA 589 K +I+ E PE K E+ TV E+ K E P + IP + K ++ Sbjct: 279 KMPEIQKPELPKVPEVPKPELP-TVPEVPKSEAPKFPEIP--KPELPKIPEVPKPELPKV 335 Query: 590 PNVXSDAAAVPEIKTPEAADAPKLADNP 673 P + A VPEI PE P+L P Sbjct: 336 PEITKPA--VPEIPKPELPTMPQLPKLP 361 Score = 28.3 bits (60), Expect = 5.9 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Frame = +2 Query: 413 KSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVK-KIDLA 589 K +I E PE K ++ E SK E P + E A +P + K ++ Sbjct: 146 KMPEIPKPELPKFPEIPKPDLPK-FPENSKPEVPKLMETE--KPEAPKVPEIPKPELPKL 202 Query: 590 PNVXS-DAAAVPEIKTPEAADAPKLADNP 673 P V +A VPEI+ PE P+L P Sbjct: 203 PEVPKLEAPKVPEIQKPELPKMPELPKMP 231 >At3g20280.2 68416.m02570 PHD finger family protein contains Pfam profile: PF00628 PHD-finger Length = 482 Score = 29.1 bits (62), Expect = 3.4 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +2 Query: 428 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPNV 598 K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V Sbjct: 344 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 403 Query: 599 XSDAAAVPEIKTP 637 + +A KTP Sbjct: 404 TQEDSAFNTEKTP 416 >At3g20280.1 68416.m02569 PHD finger family protein contains Pfam profile: PF00628 PHD-finger Length = 743 Score = 29.1 bits (62), Expect = 3.4 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Frame = +2 Query: 428 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPNV 598 K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V Sbjct: 605 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 664 Query: 599 XSDAAAVPEIKTP 637 + +A KTP Sbjct: 665 TQEDSAFNTEKTP 677 >At2g45800.1 68415.m05696 LIM domain-containing protein similar to PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain protein PLIM1 [Nicotiana tabacum] GI:5932418; contains Pfam profile PF00412: LIM domain Length = 226 Score = 28.7 bits (61), Expect = 4.5 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +2 Query: 266 DEVPAIPEAKKDDIAPE 316 D+ +IPEAK+DD APE Sbjct: 197 DDTASIPEAKEDDAAPE 213 >At1g12080.2 68414.m01397 expressed protein Length = 138 Score = 28.7 bits (61), Expect = 4.5 Identities = 21/81 (25%), Positives = 39/81 (48%) Frame = +2 Query: 407 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDL 586 EA+ D + E+ + +D KTEV + +EEK AE ++ A++ KK ++ Sbjct: 64 EAEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVEE-EKKTEV 117 Query: 587 APNVXSDAAAVPEIKTPEAAD 649 ++ AA E+ +A + Sbjct: 118 VEEKQTEVAAAEEVAVEKAEE 138 >At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing protein low similarity to CRP1 [Zea mays] GI:3289002; contains Pfam profile PF01535: PPR repeat Length = 793 Score = 28.3 bits (60), Expect = 5.9 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 402 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 515 M K+N+ + K+K ++L LK K YK + K Q + L Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777 >At2g22450.1 68415.m02662 riboflavin biosynthesis protein, putative similar to SP|P50855 Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] {Actinobacillus pleuropneumoniae}; contains Pfam profiles PF00925: GTP cyclohydrolase II, PF00926: 3,4-dihydroxy-2-butanone 4-phosphate synthase Length = 476 Score = 27.9 bits (59), Expect = 7.9 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +2 Query: 530 EGSADSAAIIPNMVKKIDLAPNVXSDAAAVPEIKTPEAADAPKLADNPVDEDKPAD 697 EG S++ I+L P++ S E+ P D+P++ D D D+P D Sbjct: 50 EGDVFSSSKSNGSSMGIELQPDLVSFGTLAAEM-IPTTMDSPEVEDEEFDLDRPTD 104 >At2g18050.1 68415.m02098 histone H1-3 (HIS1-3) similar to histone H1 [Lycopersicon pennellii] SWISS-PROT:P40267; identical to cDNA histone H1-3 (His1-3) GI:1809314, histone H1-3 [Arabidopsis thaliana] GI:1809305 Length = 167 Score = 27.9 bits (59), Expect = 7.9 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +3 Query: 360 PKKKSRKQNHPRFPMLKQNLLILKWKN----QLLSLKIQKLKYKLPSLKFQKKKNLVL 521 P+K + P F M+K+ L++LK KN ++ KI++ L F+K +L L Sbjct: 16 PRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQL 73 >At2g02170.1 68415.m00153 remorin family protein contains Pfam domain, PF03763: Remorin, C-terminal region Length = 486 Score = 27.9 bits (59), Expect = 7.9 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +2 Query: 401 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 550 +AE K ++KVE + +D + AT+ E EEK +A +A+ +A Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,427,043 Number of Sequences: 28952 Number of extensions: 182692 Number of successful extensions: 609 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 581 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 606 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1716774400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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