Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0147
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 1.0
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 26 1.8
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 26 1.8
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 25 3.1
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 25 5.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 5.4
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 24 7.1
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 24 7.1
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 24 7.1
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 24 7.1
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 24 7.1
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 24 7.1
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe... 24 9.4
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 24 9.4
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 27.1 bits (57), Expect = 1.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 65 KMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLG--SLMFMFFVTAV 232
+M +NS + S LT+ + +G+ Y LS +I GYL S+ F+ V +V
Sbjct: 323 QMRINSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTNAVIEKGYLPFVSVAFLSLVPSV 380
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 26.2 bits (55), Expect = 1.8
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 194 LGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVL-SMGISLIAAGMVHRICFTTCLIF 364
L L F F V + ++L G + LP ++L ++ I +AA + FTTCLI+
Sbjct: 131 LTGLCFATFSYEVSPVVSVLSG-VLLISLPTLILLNLCILKLAAKLHLSALFTTCLIY 187
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 1.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 276 FNWNALPNRIVSRLPTAVTK 217
FNW++L + ++ R+P A TK
Sbjct: 11 FNWSSLSSILLPRIPLATTK 30
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +1
Query: 262 SIPIEITRSSTIDGNIIDCCWHGPQDLFHHMPHFLRDNHLL 384
S+PI + S T I+ C HG +PH+++ ++
Sbjct: 113 SLPIVGSISETSVSGIMSTCTHGSSLQHQVLPHYIKSMRIM 153
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 5.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 306 IPIDSTTSGNFNWNALPN 253
+P D++T+ +F WN L N
Sbjct: 331 LPADASTARSFGWNVLIN 348
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 24.6 bits (51), Expect = 5.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 156 SCGLYICIPENIKRVNIDDSTKDVALFTAILPYFIWSN 43
+C +IC+ ++IKR+ D+ +D +L +P I+ +
Sbjct: 882 ACQHFICVKDSIKRLG-DNKFEDKSLRICTIPNSIFDS 918
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 24.2 bits (50), Expect = 7.1
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +2
Query: 38 HKLLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMF 217
H+L I YG A ++F ++ L L K +++ +GG L L+
Sbjct: 83 HRLRYINYGNPAPFGLSAFAFTTFLLSLFNVNAGHVKVSNMVTAPAAFYGG-LAQLLASM 141
Query: 218 FVTAVGN 238
+ A GN
Sbjct: 142 WEMASGN 148
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 24.2 bits (50), Expect = 7.1
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +1
Query: 37 AQITPNKIRQNGGKQCHVLRTVVNINPFDIFWNANV*TTAYTVSYDYNIRR 189
A TP K N G V +I PF I WN + +T S Y IRR
Sbjct: 695 ASFTPAKF--NTGIDAKETTIVSSIGPFLISWNLDRVKRGFTDS--YKIRR 741
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 265 IPIEITRSSTIDGNIIDCCWHGP 333
+ + T ID NI D C H P
Sbjct: 114 VEVVCTNQKIIDENITDMCQHSP 136
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 132 PENIKRVNIDDSTKDVALF 76
PEN +N D TKD+++F
Sbjct: 95 PENSISLNYDSETKDLSIF 113
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 24.2 bits (50), Expect = 7.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 328 GPQDLFHHMPHFLRDNHL 381
G Q + H+ HF+ NHL
Sbjct: 217 GKQHIIHYERHFMHKNHL 234
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 230 VGNLETILFGKAFQLKLPEVVLSMG 304
+GN++ FGKAF +++P ++S G
Sbjct: 724 LGNVKDSCFGKAFNVEIP--IISRG 746
>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 23.8 bits (49), Expect = 9.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 98 LSSILTLLIFSGMQMYKPQLILSPMTIIFGGYL 196
+SS+L L++FS + ++ P+ + I+F YL
Sbjct: 68 VSSVLMLILFSWLAIHIPKSSVPHALILFYVYL 100
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 238 PRDNSVW*SIPIEITRSSTID 300
PRD +W ++ E T S+T D
Sbjct: 379 PRDAKIWGNVIYEATTSTTYD 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,490
Number of Sequences: 5004
Number of extensions: 32503
Number of successful extensions: 92
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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