Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0147
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0275 - 23762905-23762995,23763775-23763841,23763925-237639... 66 1e-11
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 29 1.3
03_05_0089 - 20669197-20669280,20669944-20670030,20670143-206702... 28 2.9
11_01_0144 + 1187532-1187813,1188913-1189454,1189621-1189707,119... 27 3.8
07_01_1083 - 9862334-9862570,9862602-9863185,9863491-9863596 27 6.7
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 27 6.7
08_02_1448 - 27168389-27172021 26 8.9
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602... 26 8.9
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 26 8.9
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 26 8.9
>05_05_0275 -
23762905-23762995,23763775-23763841,23763925-23763976,
23764966-23765124
Length = 122
Score = 65.7 bits (153), Expect = 1e-11
Identities = 35/105 (33%), Positives = 56/105 (53%)
Frame = +2
Query: 68 MAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLET 247
MA S LS +L + S ++MY+ + S + I GG++ SL+F+F +T +GN +
Sbjct: 1 MASTGGRSMALSLLLFAVTLSLLEMYRGRFASSELMTIAGGFVSSLLFLFLLTFIGNYQE 60
Query: 248 ILFGKAFQLKLPEVVLSMGISLIAAGMVHRICFTTCLIFCVITIY 382
+ VV++ +LI AG VHR+C TTC +F +Y
Sbjct: 61 ---ANGVKTGWGAVVVAELTALIVAGTVHRVCITTCFLFSAGFLY 102
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 68 MAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGG 190
+ ++ A+SFV+ ++T + FSG+ M + L+L+P I G
Sbjct: 389 LPLSDASSFVVLYLVTAVYFSGV-MVRLMLVLAPAACILSG 428
>03_05_0089 -
20669197-20669280,20669944-20670030,20670143-20670261,
20670838-20671076,20671159-20671215,20671564-20672195,
20673172-20673213,20675849-20676133
Length = 514
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/88 (23%), Positives = 38/88 (43%)
Frame = +2
Query: 80 SATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFG 259
+AT+ L +LT + + MY ++S T IF G+LG+L ++ +G
Sbjct: 35 AATTIELG-LLTRIAAPAVVMYMINYLMSMSTQIFSGHLGNLELAAASLGNNGIQMFAYG 93
Query: 260 KAFQLKLPEVVLSMGISLIAAGMVHRIC 343
Q+ +++ G L V +C
Sbjct: 94 LMCQILASFAMINFG-KLGMGSAVETLC 120
>11_01_0144 +
1187532-1187813,1188913-1189454,1189621-1189707,
1190151-1190260,1190346-1190464,1190548-1190634,
1191554-1191853
Length = 508
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 107 ILTLLIFS--GMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFG 259
I+T L F G+ ++ L+ + G +GS++ F++ G L + FG
Sbjct: 191 IVTYLAFLNLGIHLFLSWLLTVKFQLGLAGVMGSMVISFWIPVFGQLAFVFFG 243
>07_01_1083 - 9862334-9862570,9862602-9863185,9863491-9863596
Length = 308
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 97 TVVNINPFDIFWNANV*TTAYTVSYDYNIRRLSWF 201
T VN +P +IF + + + S+DY +++L WF
Sbjct: 111 TTVNFDPSEIFVDLS------SPSFDYRLKKLKWF 139
>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 59 YGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGG 190
YG MAV S+ ++SI++ ++ ++ +I P+ IF G
Sbjct: 1325 YGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPLNSIFPG 1368
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 143 TFAFQKISKGLILTTVRRTWHCLPPFCRILFGVICANL 30
TF Q+ + L +T+ RTW P CR L + A+L
Sbjct: 553 TFGMQETMEMLQVTSSLRTWIVPSPLCRDLKDLSLASL 590
>08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,
6027187-6027258,6027354-6027425,6027784-6027855,
6027980-6028051,6028134-6028205,6028483-6028554,
6028791-6028865,6028970-6029041,6029134-6029199,
6029267-6029332,6029409-6029453,6029542-6029606,
6029697-6030076,6030455-6030653,6030725-6030883,
6030966-6031084,6031156-6031200,6031226-6031791,
6031871-6032021,6032117-6032454,6033702-6033765,
6034329-6034370,6035572-6035575,6035853-6036039,
6037252-6037323,6037687-6037758,6037867-6037938,
6038019-6038090,6038651-6038725,6038815-6038886,
6038988-6039053,6039163-6039228,6039348-6039392,
6039469-6039533,6039615-6039994,6040070-6040202,
6040354-6040512,6040599-6040717,6040805-6041015,
6041155-6041386,6041469-6041619,6041725-6042084
Length = 1952
Score = 26.2 bits (55), Expect = 8.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 67 NGGKQCHVLRTVVNINP 117
N G CH++R V++NP
Sbjct: 1136 NAGTVCHIIRLAVSLNP 1152
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 190 ASEYYSHRRQYKLWFIHLHSRKYQK 116
+S + RR++ WFI LHS+ +K
Sbjct: 217 SSSDFCSRREFARWFIKLHSKLERK 241
>05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 26.2 bits (55), Expect = 8.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +2
Query: 116 LLIFSGMQMYKPQL---ILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKLPE 286
++ +S ++M+ P L I SP + GSL F FF + VG + G+ F L E
Sbjct: 873 IVTYSDVEMFDPFLGKWICSPSMMNSDSRKGSLGFFFFFSNVGGYQKT--GRRFALGAAE 930
Query: 287 V 289
+
Sbjct: 931 M 931
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,298
Number of Sequences: 37544
Number of extensions: 190731
Number of successful extensions: 459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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