Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0147
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.0  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 699

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = -1

Query: 307 YSHR*YYFW*FQLECFTKQNCLEVTNSSYKEH--EH**TKIASEYYSHRRQYKLWFIHLH 134
           Y+ R Y     + E  + ++  + T  SY++H  E+      S+Y   RR Y     H H
Sbjct: 598 YTRRSYRQHVREYELASSKSQYKYTRRSYRQHTREYKLASSKSQYKYTRRSY-----HQH 652

Query: 133 SRKYQKG*Y*RQYEGRGTVYRHFAVFY 53
           +R+Y+      QY+     YRH A  Y
Sbjct: 653 TREYKLASSKSQYKYTRRSYRHNAREY 679


>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 44  LLQIKYGKMAVNSATSFVLSSILTLLIF 127
           LLQ+K    A+ S TSFV+  ++ LL++
Sbjct: 321 LLQVKTSIYALRSRTSFVIVDLIELLLY 348


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 203 LMFMFFVTAVGNLETILFGKAFQLKLPE--VVLSMGISLIAAGMVHRICFTTCLIFCVIT 376
           ++    + +V +L  IL  K  QL++    ++ S+ +S +  G+V    FT+C I   +T
Sbjct: 102 IVLAILIISVNSLVLILVIKVKQLRVTTNYLLCSLAVSDLLTGLVSIPLFTSCNILQTLT 161

Query: 377 I 379
           I
Sbjct: 162 I 162


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/70 (18%), Positives = 30/70 (42%)
 Frame = +2

Query: 11   VKLSKNTSWHKLLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGG 190
            +K  +   W   L+      ++ S     ++ +  ++ F G+   K   ++  M  + GG
Sbjct: 1172 MKRYRKRLWPGDLRDVLSLQSIASVIFIYIACLTPIITFGGLMSTKTGHMMGAMEQMLGG 1231

Query: 191  YLGSLMFMFF 220
             +G ++F  F
Sbjct: 1232 AIGGILFALF 1241


>SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 179 IFGGYLGSLMFMFFVTA 229
           +F  YLG+L+FMF V+A
Sbjct: 19  VFAEYLGTLLFMFSVSA 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,237,950
Number of Sequences: 59808
Number of extensions: 229643
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)