Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0147
         (385 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001712-1|AAN71467.1|  151|Drosophila melanogaster RE67710p pro...    83   2e-16
AE014297-766|AAN13389.1|  141|Drosophila melanogaster CG31460-PA...    83   2e-16
BT003301-1|AAO25061.1|  348|Drosophila melanogaster GH10666p pro...    28   3.6  
AE014296-3419|AAF51641.1|  340|Drosophila melanogaster CG3698-PA...    28   3.6  
AE014296-737|AAN11577.1|  406|Drosophila melanogaster CG32257-PA...    28   4.8  

>BT001712-1|AAN71467.1|  151|Drosophila melanogaster RE67710p
           protein.
          Length = 151

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 34/104 (32%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
 Frame = +2

Query: 77  NSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILF 256
           ++  S ++S +L++++F  ++        S + ++ GGYL S +F+  +T V N E ++F
Sbjct: 19  STVVSSIISGLLSIVLFGTLRFCSEWFNDSQLRVLLGGYLFSWVFILSLTCVSNAEMVVF 78

Query: 257 GKAFQLK-LPEVVLSMGISLIAAGMVHRICFTTCLIFCVITIYY 385
           G+ FQ K LPE++  + +++ AAG+VHR+C TT ++F ++ +Y+
Sbjct: 79  GQDFQAKLLPEIIFCLSLTVAAAGLVHRVCATTSVLFSLVGLYF 122


>AE014297-766|AAN13389.1|  141|Drosophila melanogaster CG31460-PA
           protein.
          Length = 141

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 34/104 (32%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
 Frame = +2

Query: 77  NSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILF 256
           ++  S ++S +L++++F  ++        S + ++ GGYL S +F+  +T V N E ++F
Sbjct: 9   STVVSSIISGLLSIVLFGTLRFCSEWFNDSQLRVLLGGYLFSWVFILSLTCVSNAEMVVF 68

Query: 257 GKAFQLK-LPEVVLSMGISLIAAGMVHRICFTTCLIFCVITIYY 385
           G+ FQ K LPE++  + +++ AAG+VHR+C TT ++F ++ +Y+
Sbjct: 69  GQDFQAKLLPEIIFCLSLTVAAAGLVHRVCATTSVLFSLVGLYF 112


>BT003301-1|AAO25061.1|  348|Drosophila melanogaster GH10666p
           protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 92  FVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYL-GSLMFMFFV 223
           FVL S++  LI   + M    L+   +T++F GYL   L+F++ V
Sbjct: 258 FVLYSLVNTLIVGLLHMTSDYLLKPLLTMLFNGYLQPPLIFLYNV 302


>AE014296-3419|AAF51641.1|  340|Drosophila melanogaster CG3698-PA
           protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 92  FVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYL-GSLMFMFFV 223
           FVL S++  LI   + M    L+   +T++F GYL   L+F++ V
Sbjct: 250 FVLYSLVNTLIVGLLHMTSDYLLKPLLTMLFNGYLQPPLIFLYNV 294


>AE014296-737|AAN11577.1|  406|Drosophila melanogaster CG32257-PA
           protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +2

Query: 95  VLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQL 274
           V+ ++LT+ + S +  Y+ +++ +   +    +  S+    F   +GN  T L G  F  
Sbjct: 310 VVRTLLTIFVASSINDYERKIVTALRDVPSRAW--SIEVQRFSEQLGNDTTALSGSGFFY 367

Query: 275 KLPEVVLSMGISLI 316
               +VL+MG ++I
Sbjct: 368 LTRSLVLAMGTTII 381


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,419
Number of Sequences: 53049
Number of extensions: 346427
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)