Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0147
(385 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical pr... 30 0.49
AF100306-9|ABB88216.1| 105|Caenorhabditis elegans Hypothetical ... 29 1.1
Z66520-5|CAA91386.1| 215|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical pr... 28 2.6
AF016449-2|AAG24006.1| 333|Caenorhabditis elegans Seven tm rece... 28 2.6
U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium) v... 24 3.1
U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium) v... 24 3.1
U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium) v... 24 3.1
Z92812-4|CAB07278.1| 313|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z92812-1|CAB07276.1| 334|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z93388-15|CAB07667.1| 356|Caenorhabditis elegans Hypothetical p... 27 6.0
Z93374-10|CAB07561.1| 356|Caenorhabditis elegans Hypothetical p... 27 6.0
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 27 6.0
AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine... 27 6.0
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 27 6.0
>Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical
protein ZK822.5a protein.
Length = 577
Score = 30.3 bits (65), Expect = 0.49
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +2
Query: 23 KNTSWHKLLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGS 202
K+T H+ +Y + + F L +L +++ + +Y P + LSP+ I YL
Sbjct: 114 KSTCLHEYFIHRYNSILIRRL--FSLLFLLFTIVYMSVVLYAPSVALSPVLQINKWYL-V 170
Query: 203 LMF---MFFVTAVGNLETILFGKAFQLKLPEVVLSMGI-SLIAAGMVH 334
L+F T +G L+ +++ + Q V++ G+ +LI G+ H
Sbjct: 171 LIFGCTTTLYTCLGGLKAVVWTDSLQ----AVIMYTGVFTLIYKGLSH 214
>AF100306-9|ABB88216.1| 105|Caenorhabditis elegans Hypothetical
protein T24C4.9 protein.
Length = 105
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 155 LILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVH 334
++L + ++ GYL SL M + T L ++FG + + +V+ + + I + +
Sbjct: 25 MVLRSVIVLSAGYLASLALMGYFTIKMTLMCVVFGTNTLVIITDVISMIAVFTIRSDQLR 84
Query: 335 R 337
R
Sbjct: 85 R 85
>Z66520-5|CAA91386.1| 215|Caenorhabditis elegans Hypothetical
protein F49E12.7 protein.
Length = 215
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +2
Query: 101 SSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKL 280
SS L++ + S M + KP +L P ++ Y L + TA LE + F+L L
Sbjct: 113 SSALSISLISLMCVPKPLWLLWPGLLMQSSYTLGLSVLTMATAPKILEALGGVIDFELAL 172
Query: 281 PEVVLSMGISL 313
V SMG ++
Sbjct: 173 IFTVYSMGFAM 183
>Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical
protein R04D3.12 protein.
Length = 320
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 129 ENIKRVNIDDSTKDVALFTAILPYFIWSNLCQLV 28
E ++ VNID + + L AIL Y W N LV
Sbjct: 164 EELRVVNIDGNNSRMYLIFAILNYSHWPNTSNLV 197
>AF016449-2|AAG24006.1| 333|Caenorhabditis elegans Seven tm
receptor protein 244 protein.
Length = 333
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 44 LLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFV 223
+ +I Y + + +A F + ++I S +M PQ P T IF G + +F +
Sbjct: 49 IFEIIYSVLDILAAPDFFSHDSIFIVITSSERMLVPQFFQVPFTNIFCSMFGVSLVIFVI 108
>U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
b protein.
Length = 495
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 196 WFINVHVLCNCCW 234
W IN ++ NCCW
Sbjct: 167 WKINDGLMSNCCW 179
Score = 21.8 bits (44), Expect(2) = 3.1
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 298 DGNIIDCCWHG 330
DG + +CCW G
Sbjct: 171 DGLMSNCCWRG 181
>U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
a protein.
Length = 490
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 196 WFINVHVLCNCCW 234
W IN ++ NCCW
Sbjct: 162 WKINDGLMSNCCW 174
Score = 21.8 bits (44), Expect(2) = 3.1
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 298 DGNIIDCCWHG 330
DG + +CCW G
Sbjct: 166 DGLMSNCCWRG 176
>U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
c protein.
Length = 477
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 196 WFINVHVLCNCCW 234
W IN ++ NCCW
Sbjct: 162 WKINDGLMSNCCW 174
Score = 21.8 bits (44), Expect(2) = 3.1
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 298 DGNIIDCCWHG 330
DG + +CCW G
Sbjct: 166 DGLMSNCCWRG 176
>Z92812-4|CAB07278.1| 313|Caenorhabditis elegans Hypothetical
protein T03E6.4 protein.
Length = 313
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 326 MVHRICFTTCLIFCVITIYY 385
M+ +CFTT ++FC I IYY
Sbjct: 206 MIIVVCFTT-ILFCSINIYY 224
>Z92812-1|CAB07276.1| 334|Caenorhabditis elegans Hypothetical
protein T03E6.1 protein.
Length = 334
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 326 MVHRICFTTCLIFCVITIYY 385
M+ +CFTT ++FC I IYY
Sbjct: 206 MIIVVCFTT-ILFCSINIYY 224
>Z93388-15|CAB07667.1| 356|Caenorhabditis elegans Hypothetical
protein C06C6.1 protein.
Length = 356
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 92 FVLSSILTLLIFSGMQMYKPQLI--LSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKA 265
FV S++T + Q + Q+ L T I ++ + + ++T +GN+ T+ FG+
Sbjct: 221 FVTKSLMTSAYSANFQKLQWQMFYALVSQTGIPILFMQFPVTLIYITCLGNISTLFFGQL 280
Query: 266 FQLKL 280
QL +
Sbjct: 281 QQLTI 285
>Z93374-10|CAB07561.1| 356|Caenorhabditis elegans Hypothetical
protein C06C6.1 protein.
Length = 356
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 92 FVLSSILTLLIFSGMQMYKPQLI--LSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKA 265
FV S++T + Q + Q+ L T I ++ + + ++T +GN+ T+ FG+
Sbjct: 221 FVTKSLMTSAYSANFQKLQWQMFYALVSQTGIPILFMQFPVTLIYITCLGNISTLFFGQL 280
Query: 266 FQLKL 280
QL +
Sbjct: 281 QQLTI 285
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 43 ITPNKIRQNGGKQCHVLRTVVNIN 114
+TP K+ NGGK+C + + V I+
Sbjct: 371 LTPEKLIDNGGKRCTINKDVTCIS 394
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 43 ITPNKIRQNGGKQCHVLRTVVNIN 114
+TP K+ NGGK+C + + V I+
Sbjct: 374 LTPEKLIDNGGKRCTINKDVTCIS 397
>AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine
receptor alternativevariant b protein.
Length = 459
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 43 ITPNKIRQNGGKQCHVLRTVVNIN 114
+TP K+ NGGK+C + + V I+
Sbjct: 319 LTPEKLIDNGGKRCTINKDVTCIS 342
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 43 ITPNKIRQNGGKQCHVLRTVVNIN 114
+TP K+ NGGK+C + + V I+
Sbjct: 413 LTPEKLIDNGGKRCTINKDVTCIS 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,242,202
Number of Sequences: 27780
Number of extensions: 180734
Number of successful extensions: 504
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -